MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:76.2 nTPM
GTEx:16.7 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Mouse:36.5 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.6
1827 Male, age 72, unknown 59.5
1870 Female, age 42, unknown 56.7
2828 Female, age 72, unknown 45.6
2666 Male, age 74, left hemisphere 40.6
2586 Male, age 75, left hemisphere 32.1
2019 Male, age 18, unknown 25.9
2411 Female, age 72, unknown 23.0
1830 Male, age 51, unknown 21.6
2219 Male, age 76, both hemispheres 17.8
1833 Male, age 53, unknown 13.4
Dorsal raphe nucleus
nTPM: 31.7
2298 Female, age 72, unknown 46.6
2750 Male, age 76, both hemispheres 43.0
2047 Male, age 72, unknown 42.4
1828 Male, age 53, unknown 16.6
2016 Female, age 72, unknown 9.7
Inferior colliculus
nTPM: 21.4
1890 Male, age 53, unknown 24.1
2097 Female, age 72, unknown 23.9
1848 Female, age 42, unknown 22.0
2849 Male, age 72, unknown 15.7
Median raphe nucleus
nTPM: 76.2
2220 Male, age 76, midline 76.2
Periaquaductal grey, anterior
nTPM: 47.8
1795 Male, age 51, unknown 85.3
2502 Female, age 75, unknown 38.5
1947 Male, age 18, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 46.2
1831 Male, age 72, unknown 91.6
2850 Male, age 76, both hemispheres 42.8
1840 Male, age 53, unknown 28.3
2464 Female, age 72, unknown 22.0
Periaquaductal grey, lateral
nTPM: 33.0
2053 Male, age 18, unknown 47.0
2272 Male, age 74, both hemispheres 26.8
2140 Male, age 76, both hemispheres 25.1
Pretectal area
nTPM: 50.3
1815 Male, age 53, unknown 103.8
1944 Female, age 72, unknown 74.2
1816 Male, age 51, unknown 62.4
2007 Male, age 72, unknown 54.4
1817 Female, age 42, unknown 48.4
2407 Male, age 75, both hemispheres 45.3
2825 Male, age 18, unknown 42.9
2224 Female, age 72, unknown 42.0
2273 Male, age 74, both hemispheres 28.6
2667 Female, age 75, unknown 28.3
2316 Male, age 76, right hemisphere 22.6
Red nucleus
nTPM: 12.8
2785 Male, age 18, unknown 39.2
2584 Male, age 75, left hemisphere 32.4
2725 Female, age 75, unknown 19.1
2503 Female, age 72, unknown 12.8
2588 Male, age 74, left hemisphere 9.6
2823 Male, age 76, right hemisphere 7.8
1904 Male, age 53, unknown 6.4
1954 Female, age 42, unknown 6.4
2227 Male, age 72, unknown 6.4
2769 Male, age 72, unknown 5.9
1865 Male, age 51, unknown 4.4
1821 Female, age 72, unknown 3.3
Substantia nigra
nTPM: 15.8
1889 Female, age 72, unknown 51.5
2583 Male, age 75, right hemisphere 27.5
2665 Male, age 74, both hemispheres 16.5
2590 Female, age 75, unknown 13.0
1851 Male, age 51, unknown 10.0
2409 Female, age 72, unknown 9.7
1941 Male, age 53, unknown 9.6
2241 Male, age 72, unknown 8.4
1916 Female, age 42, unknown 7.5
2699 Male, age 18, unknown 4.0
Superior colliculus
nTPM: 37.0
1796 Male, age 53, unknown 82.8
2664 Male, age 75, both hemispheres 50.3
2261 Male, age 18, unknown 40.6
2087 Female, age 72, unknown 39.7
1913 Female, age 42, unknown 37.7
1839 Male, age 51, unknown 31.7
2668 Female, age 75, unknown 28.3
2587 Male, age 74, left hemisphere 25.1
1995 Male, age 72, unknown 17.1
1895 Male, age 76, right hemisphere 16.7
Ventral tegmental area
nTPM: 31.8
2218 Male, age 76, both hemispheres 46.1
2223 Female, age 72, unknown 45.9
2021 Male, age 53, unknown 39.8
1942 Male, age 51, unknown 34.3
1915 Female, age 42, unknown 14.0
2410 Female, age 72, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 183

Max nTPM: 130.9
Min nTPM: 3.1
Std nTPM: 15.7
Median nTPM: 12.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 130.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 102.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 100.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 69.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 49.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 42.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 42.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 41.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 40.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 38.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 37.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 38.7
Min nTPM: 34.5
Sample A Male 38.7
Sample B Male 34.5
Sample C Female 35.0
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69671905 Antisense, RP_050428_02_F01, Mouse strain C57BL/6J (56 days, male) 3.5
73788010 Antisense, RP_051213_01_A05, Mouse strain C57BL/6J (56 days, male) 3.1

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