MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:34.9 nTPM
GTEx:14.7 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:20.8 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2586 Male, age 75, left hemisphere 38.3
1870 Female, age 42, unknown 34.4
2411 Female, age 72, unknown 33.8
1827 Male, age 72, unknown 33.5
2219 Male, age 76, both hemispheres 31.9
2666 Male, age 74, left hemisphere 31.3
1830 Male, age 51, unknown 31.0
1833 Male, age 53, unknown 30.9
2828 Female, age 72, unknown 30.3
2019 Male, age 18, unknown 29.9
Dorsal raphe nucleus
nTPM: 33.2
2047 Male, age 72, unknown 34.6
2298 Female, age 72, unknown 34.6
2750 Male, age 76, both hemispheres 33.5
2016 Female, age 72, unknown 31.9
1828 Male, age 53, unknown 31.2
Inferior colliculus
nTPM: 34.9
2097 Female, age 72, unknown 37.8
1890 Male, age 53, unknown 35.0
1848 Female, age 42, unknown 34.0
2849 Male, age 72, unknown 32.7
Median raphe nucleus
nTPM: 30.8
2220 Male, age 76, midline 30.8
Periaquaductal grey, anterior
nTPM: 30.6
1947 Male, age 18, unknown 33.0
1795 Male, age 51, unknown 29.5
2502 Female, age 75, unknown 29.2
Periaquaductal grey, dorsal
nTPM: 31.6
1840 Male, age 53, unknown 35.7
1831 Male, age 72, unknown 31.0
2464 Female, age 72, unknown 30.6
2850 Male, age 76, both hemispheres 29.0
Periaquaductal grey, lateral
nTPM: 30.8
2053 Male, age 18, unknown 31.8
2272 Male, age 74, both hemispheres 30.4
2140 Male, age 76, both hemispheres 30.2
Pretectal area
nTPM: 32.3
1817 Female, age 42, unknown 36.5
2224 Female, age 72, unknown 34.1
1816 Male, age 51, unknown 33.7
1815 Male, age 53, unknown 33.5
2007 Male, age 72, unknown 33.5
2825 Male, age 18, unknown 32.6
2273 Male, age 74, both hemispheres 32.3
2667 Female, age 75, unknown 30.9
2407 Male, age 75, both hemispheres 29.9
1944 Female, age 72, unknown 29.6
2316 Male, age 76, right hemisphere 28.9
Red nucleus
nTPM: 32.4
1821 Female, age 72, unknown 35.3
1954 Female, age 42, unknown 34.7
1904 Male, age 53, unknown 34.1
2503 Female, age 72, unknown 34.1
2769 Male, age 72, unknown 33.6
1865 Male, age 51, unknown 32.9
2725 Female, age 75, unknown 32.9
2588 Male, age 74, left hemisphere 31.6
2227 Male, age 72, unknown 30.5
2823 Male, age 76, right hemisphere 30.4
2785 Male, age 18, unknown 30.1
2584 Male, age 75, left hemisphere 28.6
Substantia nigra
nTPM: 33.8
1916 Female, age 42, unknown 38.0
2583 Male, age 75, right hemisphere 36.4
2241 Male, age 72, unknown 36.2
1889 Female, age 72, unknown 34.7
1851 Male, age 51, unknown 33.9
2699 Male, age 18, unknown 33.3
2665 Male, age 74, both hemispheres 32.3
2590 Female, age 75, unknown 32.2
2409 Female, age 72, unknown 32.0
1941 Male, age 53, unknown 29.1
Superior colliculus
nTPM: 31.3
2668 Female, age 75, unknown 35.0
1796 Male, age 53, unknown 34.9
2261 Male, age 18, unknown 32.6
1839 Male, age 51, unknown 32.0
2087 Female, age 72, unknown 31.5
2587 Male, age 74, left hemisphere 30.7
1895 Male, age 76, right hemisphere 30.1
1913 Female, age 42, unknown 29.7
1995 Male, age 72, unknown 28.7
2664 Male, age 75, both hemispheres 27.9
Ventral tegmental area
nTPM: 32.6
2410 Female, age 72, unknown 34.8
1915 Female, age 42, unknown 33.4
2218 Male, age 76, both hemispheres 32.6
2223 Female, age 72, unknown 32.4
1942 Male, age 51, unknown 32.2
2021 Male, age 53, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 183

Max nTPM: 23.4
Min nTPM: 5.8
Std nTPM: 3.2
Median nTPM: 14.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 23.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 22.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 21.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 21.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 21.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 21.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 21.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 20.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 19.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.4
Samples: 4

Max nTPM: 37.4
Min nTPM: 28.8
Sample A Female 37.4
Sample B Female 28.8
Sample C Male 34.7
Sample D Male 32.7
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 45.4
Min nTPM: 32.6
Sample A Female 45.4
Sample B Female 32.6
Sample C Male 36.0
Sample D Male 38.5
Periaqueductal gray
nTPM: 32.9
Samples: 3

Max nTPM: 34.7
Min nTPM: 31.2
Sample B Female 32.9
Sample C Male 34.7
Sample D Male 31.2
Superior colliculi
nTPM: 38.6
Samples: 4

Max nTPM: 45.6
Min nTPM: 31.7
Sample A Female 45.6
Sample B Female 31.7
Sample C Male 35.9
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.9
Sample A Male 20.3
Sample B Male 18.9
Sample C Female 22.0
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
100144168 Antisense, RP_110421_01_A01, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo