MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.4 nTPM
HPA Brain:29.4 nTPM
GTEx:28.4 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:51.0 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2586 Male, age 75, left hemisphere 34.0
2019 Male, age 18, unknown 25.7
2828 Female, age 72, unknown 25.6
1827 Male, age 72, unknown 25.0
2411 Female, age 72, unknown 23.1
1833 Male, age 53, unknown 22.3
1870 Female, age 42, unknown 22.0
2219 Male, age 76, both hemispheres 22.0
1830 Male, age 51, unknown 20.4
2666 Male, age 74, left hemisphere 17.9
Dorsal raphe nucleus
nTPM: 23.3
2298 Female, age 72, unknown 27.6
2750 Male, age 76, both hemispheres 23.3
2047 Male, age 72, unknown 22.9
2016 Female, age 72, unknown 21.8
1828 Male, age 53, unknown 21.1
Inferior colliculus
nTPM: 21.8
2097 Female, age 72, unknown 26.3
1890 Male, age 53, unknown 21.6
1848 Female, age 42, unknown 20.8
2849 Male, age 72, unknown 18.5
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Periaquaductal grey, anterior
nTPM: 29.4
2502 Female, age 75, unknown 30.8
1795 Male, age 51, unknown 30.7
1947 Male, age 18, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 19.4
1840 Male, age 53, unknown 22.3
2464 Female, age 72, unknown 20.7
1831 Male, age 72, unknown 18.8
2850 Male, age 76, both hemispheres 15.6
Periaquaductal grey, lateral
nTPM: 22.2
2053 Male, age 18, unknown 22.5
2272 Male, age 74, both hemispheres 22.2
2140 Male, age 76, both hemispheres 21.9
Pretectal area
nTPM: 24.0
2007 Male, age 72, unknown 27.3
1944 Female, age 72, unknown 27.1
1816 Male, age 51, unknown 26.2
1817 Female, age 42, unknown 24.0
2224 Female, age 72, unknown 24.0
2407 Male, age 75, both hemispheres 24.0
2273 Male, age 74, both hemispheres 23.6
2667 Female, age 75, unknown 23.3
2825 Male, age 18, unknown 21.8
1815 Male, age 53, unknown 21.3
2316 Male, age 76, right hemisphere 21.1
Red nucleus
nTPM: 23.2
2785 Male, age 18, unknown 30.6
2584 Male, age 75, left hemisphere 29.0
2503 Female, age 72, unknown 26.0
2227 Male, age 72, unknown 24.3
2725 Female, age 75, unknown 24.0
2769 Male, age 72, unknown 24.0
1904 Male, age 53, unknown 23.5
2588 Male, age 74, left hemisphere 22.1
1821 Female, age 72, unknown 19.4
1865 Male, age 51, unknown 18.9
2823 Male, age 76, right hemisphere 18.9
1954 Female, age 42, unknown 17.9
Substantia nigra
nTPM: 22.1
1916 Female, age 42, unknown 28.6
2409 Female, age 72, unknown 27.6
1889 Female, age 72, unknown 24.7
2583 Male, age 75, right hemisphere 23.3
1851 Male, age 51, unknown 23.1
2665 Male, age 74, both hemispheres 21.0
1941 Male, age 53, unknown 19.5
2590 Female, age 75, unknown 19.4
2241 Male, age 72, unknown 18.2
2699 Male, age 18, unknown 15.6
Superior colliculus
nTPM: 22.6
2664 Male, age 75, both hemispheres 27.6
1796 Male, age 53, unknown 27.2
2261 Male, age 18, unknown 25.1
1995 Male, age 72, unknown 23.7
1839 Male, age 51, unknown 23.5
2668 Female, age 75, unknown 23.2
2087 Female, age 72, unknown 22.8
2587 Male, age 74, left hemisphere 19.3
1913 Female, age 42, unknown 19.0
1895 Male, age 76, right hemisphere 14.4
Ventral tegmental area
nTPM: 21.1
2410 Female, age 72, unknown 22.9
1942 Male, age 51, unknown 22.8
1915 Female, age 42, unknown 22.2
2021 Male, age 53, unknown 21.0
2218 Male, age 76, both hemispheres 19.9
2223 Female, age 72, unknown 17.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 183

Max nTPM: 63.6
Min nTPM: 10.0
Std nTPM: 9.3
Median nTPM: 27.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 63.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 57.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 56.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 54.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 49.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 47.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 46.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 45.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 43.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 44.8
Min nTPM: 22.0
Sample A Female 44.8
Sample B Female 28.0
Sample C Male 32.9
Sample D Male 22.0
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 42.2
Min nTPM: 26.6
Sample A Female 33.1
Sample B Female 33.5
Sample C Male 42.2
Sample D Male 26.6
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 31.3
Min nTPM: 20.5
Sample B Female 27.0
Sample C Male 31.3
Sample D Male 20.5
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 44.9
Min nTPM: 26.4
Sample A Female 44.9
Sample B Female 32.8
Sample C Male 33.9
Sample D Male 26.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 57.0
Min nTPM: 44.8
Sample A Male 57.0
Sample B Male 49.1
Sample C Female 44.8
Sample D Female 53.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71832850 Antisense, RP_051005_03_G07, Mouse strain C57BL/6J (56 days, male) 1.2
70919256 Antisense, RP_050713_01_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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