MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:318.0 nTPM
HPA Brain:292.8 nTPM
GTEx:318.0 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:63.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 292.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 258.1
2586 Male, age 75, left hemisphere 488.6
2828 Female, age 72, unknown 343.7
2219 Male, age 76, both hemispheres 265.7
2019 Male, age 18, unknown 236.6
2411 Female, age 72, unknown 224.5
1870 Female, age 42, unknown 213.1
1833 Male, age 53, unknown 208.8
1827 Male, age 72, unknown 207.9
1830 Male, age 51, unknown 197.4
2666 Male, age 74, left hemisphere 194.8
Dorsal raphe nucleus
nTPM: 260.5
2016 Female, age 72, unknown 359.3
1828 Male, age 53, unknown 241.6
2298 Female, age 72, unknown 237.9
2047 Male, age 72, unknown 233.0
2750 Male, age 76, both hemispheres 230.4
Inferior colliculus
nTPM: 192.0
1890 Male, age 53, unknown 221.0
1848 Female, age 42, unknown 196.6
2097 Female, age 72, unknown 179.2
2849 Male, age 72, unknown 171.3
Median raphe nucleus
nTPM: 166.4
2220 Male, age 76, midline 166.4
Periaquaductal grey, anterior
nTPM: 292.8
1795 Male, age 51, unknown 345.2
2502 Female, age 75, unknown 327.6
1947 Male, age 18, unknown 205.7
Periaquaductal grey, dorsal
nTPM: 243.2
1840 Male, age 53, unknown 267.9
2850 Male, age 76, both hemispheres 236.0
1831 Male, age 72, unknown 234.8
2464 Female, age 72, unknown 234.0
Periaquaductal grey, lateral
nTPM: 276.1
2140 Male, age 76, both hemispheres 296.5
2272 Male, age 74, both hemispheres 279.4
2053 Male, age 18, unknown 252.4
Pretectal area
nTPM: 232.4
2273 Male, age 74, both hemispheres 293.6
2316 Male, age 76, right hemisphere 274.5
1815 Male, age 53, unknown 252.2
2007 Male, age 72, unknown 237.2
1817 Female, age 42, unknown 236.7
2825 Male, age 18, unknown 223.0
1816 Male, age 51, unknown 221.0
2407 Male, age 75, both hemispheres 216.9
1944 Female, age 72, unknown 211.3
2224 Female, age 72, unknown 207.4
2667 Female, age 75, unknown 182.9
Red nucleus
nTPM: 261.0
2503 Female, age 72, unknown 337.5
2227 Male, age 72, unknown 332.9
2769 Male, age 72, unknown 325.8
2588 Male, age 74, left hemisphere 291.7
1904 Male, age 53, unknown 289.3
2785 Male, age 18, unknown 281.9
1954 Female, age 42, unknown 246.0
2584 Male, age 75, left hemisphere 231.3
1865 Male, age 51, unknown 213.8
2725 Female, age 75, unknown 205.7
1821 Female, age 72, unknown 193.8
2823 Male, age 76, right hemisphere 181.7
Substantia nigra
nTPM: 243.4
2699 Male, age 18, unknown 318.9
2590 Female, age 75, unknown 286.6
1851 Male, age 51, unknown 285.1
2583 Male, age 75, right hemisphere 281.6
2665 Male, age 74, both hemispheres 275.8
1916 Female, age 42, unknown 268.2
1889 Female, age 72, unknown 197.6
2409 Female, age 72, unknown 176.6
1941 Male, age 53, unknown 174.3
2241 Male, age 72, unknown 169.1
Superior colliculus
nTPM: 265.1
2664 Male, age 75, both hemispheres 421.5
1995 Male, age 72, unknown 315.5
2668 Female, age 75, unknown 288.2
2261 Male, age 18, unknown 281.5
1796 Male, age 53, unknown 271.5
1913 Female, age 42, unknown 250.7
2587 Male, age 74, left hemisphere 243.5
1839 Male, age 51, unknown 231.0
2087 Female, age 72, unknown 210.2
1895 Male, age 76, right hemisphere 137.7
Ventral tegmental area
nTPM: 254.5
1942 Male, age 51, unknown 299.8
1915 Female, age 42, unknown 273.6
2021 Male, age 53, unknown 257.2
2410 Female, age 72, unknown 254.9
2223 Female, age 72, unknown 228.1
2218 Male, age 76, both hemispheres 213.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 318.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 318.0
Samples: 183

Max nTPM: 857.5
Min nTPM: 44.1
Std nTPM: 141.5
Median nTPM: 308.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 857.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 661.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 645.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 634.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 631.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 624.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 600.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 595.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 594.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 592.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 572.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.4
FF:10158-103A5 76 years, female 82.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.7
Sample B Female 0.3
Sample C Male 0.8
Sample D Male 0.5
Midbrain
nTPM: 0.6
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.2
Sample A Female 1.2
Sample B Female 0.2
Sample C Male 0.5
Sample D Male 0.6
Periaqueductal gray
nTPM: 0.3
Samples: 3

Max nTPM: 0.4
Min nTPM: 0.2
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.4
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.5
Samples: 4

Max nTPM: 82.8
Min nTPM: 48.4
Sample A Male 82.8
Sample B Male 56.2
Sample C Female 48.4
Sample D Female 66.4

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