MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA Brain:29.1 nTPM
GTEx:34.3 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:45.1 nTPM
Allen mouse:6.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2666 Male, age 74, left hemisphere 31.3
1870 Female, age 42, unknown 29.9
1833 Male, age 53, unknown 27.9
1830 Male, age 51, unknown 26.6
2586 Male, age 75, left hemisphere 26.0
2019 Male, age 18, unknown 25.7
1827 Male, age 72, unknown 25.4
2828 Female, age 72, unknown 25.3
2411 Female, age 72, unknown 23.3
2219 Male, age 76, both hemispheres 20.7
Dorsal raphe nucleus
nTPM: 23.2
1828 Male, age 53, unknown 25.7
2750 Male, age 76, both hemispheres 24.8
2047 Male, age 72, unknown 23.2
2016 Female, age 72, unknown 22.6
2298 Female, age 72, unknown 19.9
Inferior colliculus
nTPM: 20.3
2849 Male, age 72, unknown 22.8
1890 Male, age 53, unknown 21.0
1848 Female, age 42, unknown 20.7
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Periaquaductal grey, anterior
nTPM: 21.4
1795 Male, age 51, unknown 22.9
1947 Male, age 18, unknown 22.0
2502 Female, age 75, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 19.4
2464 Female, age 72, unknown 22.9
2850 Male, age 76, both hemispheres 19.7
1831 Male, age 72, unknown 18.5
1840 Male, age 53, unknown 16.7
Periaquaductal grey, lateral
nTPM: 19.3
2272 Male, age 74, both hemispheres 20.3
2053 Male, age 18, unknown 20.0
2140 Male, age 76, both hemispheres 17.5
Pretectal area
nTPM: 20.9
2407 Male, age 75, both hemispheres 25.4
2825 Male, age 18, unknown 23.7
2007 Male, age 72, unknown 23.5
1817 Female, age 42, unknown 22.5
1944 Female, age 72, unknown 21.5
1815 Male, age 53, unknown 21.4
1816 Male, age 51, unknown 21.1
2667 Female, age 75, unknown 19.8
2224 Female, age 72, unknown 19.1
2273 Male, age 74, both hemispheres 16.3
2316 Male, age 76, right hemisphere 16.1
Red nucleus
nTPM: 29.1
2588 Male, age 74, left hemisphere 33.3
1865 Male, age 51, unknown 32.9
2584 Male, age 75, left hemisphere 32.4
2769 Male, age 72, unknown 30.9
2503 Female, age 72, unknown 29.8
1904 Male, age 53, unknown 29.5
1821 Female, age 72, unknown 28.6
1954 Female, age 42, unknown 28.0
2227 Male, age 72, unknown 27.7
2785 Male, age 18, unknown 27.2
2725 Female, age 75, unknown 26.5
2823 Male, age 76, right hemisphere 22.7
Substantia nigra
nTPM: 25.9
2583 Male, age 75, right hemisphere 32.6
1916 Female, age 42, unknown 28.5
2409 Female, age 72, unknown 27.0
1851 Male, age 51, unknown 26.7
1941 Male, age 53, unknown 25.6
1889 Female, age 72, unknown 25.4
2699 Male, age 18, unknown 25.3
2590 Female, age 75, unknown 24.9
2665 Male, age 74, both hemispheres 21.5
2241 Male, age 72, unknown 21.3
Superior colliculus
nTPM: 22.7
2668 Female, age 75, unknown 29.2
2587 Male, age 74, left hemisphere 26.5
2664 Male, age 75, both hemispheres 25.5
1913 Female, age 42, unknown 22.6
1995 Male, age 72, unknown 22.3
1839 Male, age 51, unknown 20.9
2087 Female, age 72, unknown 20.5
1796 Male, age 53, unknown 20.2
2261 Male, age 18, unknown 20.2
1895 Male, age 76, right hemisphere 18.8
Ventral tegmental area
nTPM: 23.6
2223 Female, age 72, unknown 28.2
2218 Male, age 76, both hemispheres 23.8
1915 Female, age 42, unknown 23.5
2021 Male, age 53, unknown 23.4
2410 Female, age 72, unknown 23.3
1942 Male, age 51, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 183

Max nTPM: 70.2
Min nTPM: 16.8
Std nTPM: 8.4
Median nTPM: 33.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 70.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 65.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 60.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 56.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 53.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 53.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 48.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.9
FF:10158-103A5 76 years, female 48.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 13.1
Sample C Male 12.3
Sample D Male 16.4
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.1
Sample A Female 13.6
Sample B Female 13.0
Sample C Male 12.1
Sample D Male 12.6
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 14.5
Min nTPM: 12.5
Sample B Female 13.9
Sample C Male 12.5
Sample D Male 14.5
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 12.1
Sample C Male 10.3
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 52.0
Min nTPM: 41.3
Sample A Male 52.0
Sample B Male 44.4
Sample C Female 42.6
Sample D Female 41.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
576415 Antisense, RP_040826_01_G01, Mouse strain C57BL/6J (56 days, male) 6.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo