HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA Brain:33.7 nTPM
GTEx:32.7 nTPM
FANTOM5:76.8 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:21.3 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 33.7
Sample id Sample description nTPM
Hippocampus
nTPM: 31.0
1911 Female, age 85, right hemisphere 33.6
2148 Female, age 91, left hemisphere 33.6
1898 Male, age 80, left hemisphere 32.4
2621 Female, age 67, right hemisphere 30.1
2529 Female, age 94, left hemisphere 29.6
1855 Male, age 76, left hemisphere 26.7
Dentate gyrus
nTPM: 33.0
2531 Female, age 67, both hemispheres 37.4
1927 Female, age 91, both hemispheres 33.2
2246 Female, age 85, both hemispheres 32.4
2530 Female, age 94, left hemisphere 32.1
2528 Male, age 74, both hemispheres 31.9
2010 Male, age 76, both hemispheres 31.1
Entorhinal gyrus
nTPM: 32.8
2764 Male, age 80, right hemisphere 33.8
2686 Male, age 75, right hemisphere 33.4
2117 Female, age 91, right hemisphere 33.0
1787 Male, age 76, left hemisphere 32.9
2613 Female, age 94, left hemisphere 31.9
1938 Female, age 85, left hemisphere 31.5
Hippocampus, CA1
nTPM: 33.1
2749 Male, age 80, left hemisphere 38.7
2082 Female, age 91, right hemisphere 35.4
2045 Male, age 76, both hemispheres 31.4
1873 Female, age 85, both hemispheres 30.7
2527 Male, age 74, both hemispheres 29.6
Hippocampus, CA2
nTPM: 31.3
2113 Female, age 91, right hemisphere 32.6
1940 Female, age 85, left hemisphere 31.7
2249 Male, age 74, both hemispheres 31.7
2437 Female, age 94, left hemisphere 31.7
1963 Male, age 80, left hemisphere 30.4
1892 Male, age 76, both hemispheres 29.5
Hippocampus, CA3
nTPM: 33.7
2620 Female, age 94, left hemisphere 41.1
2137 Male, age 80, left hemisphere 38.0
2861 Female, age 67, both hemispheres 33.5
1891 Female, age 85, both hemispheres 32.0
1867 Male, age 76, both hemispheres 29.2
2436 Male, age 74, both hemispheres 28.5
Parahippocampal cortex
nTPM: 31.3
1990 Female, age 91, right hemisphere 34.4
2532 Female, age 72, left hemisphere 31.8
2622 Female, age 67, right hemisphere 31.8
1933 Female, age 85, both hemispheres 31.7
2250 Female, age 67, right hemisphere 31.7
2018 Male, age 76, both hemispheres 31.4
2245 Female, age 91, both hemispheres 31.4
1850 Male, age 80, both hemispheres 31.2
2693 Female, age 94, both hemispheres 28.8
2692 Male, age 74, both hemispheres 28.3
Perirhinal gyrus
nTPM: 33.7
1841 Female, age 85, right hemisphere 36.7
1794 Male, age 80, right hemisphere 36.4
1847 Female, age 91, left hemisphere 33.4
2848 Male, age 76, right hemisphere 33.2
2521 Female, age 94, right hemisphere 29.0
Subiculum
nTPM: 30.5
1977 Female, age 85, both hemispheres 32.5
2619 Male, age 74, both hemispheres 31.9
2729 Female, age 91, right hemisphere 31.8
1901 Male, age 80, both hemispheres 31.6
2042 Male, age 76, both hemispheres 29.9
2438 Female, age 94, left hemisphere 25.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 32.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.7
Samples: 255

Max nTPM: 51.5
Min nTPM: 20.3
Std nTPM: 5.6
Median nTPM: 32.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 51.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 50.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 48.2
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 48.0
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 46.6
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 46.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 45.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 45.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 45.0
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 44.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 44.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 76.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 76.8
FF:10169-103B7 60 years, female 86.2
FF:10153-102I9 76 years, female 67.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 22.9
Pig sample Sample description nTPM
Subiculum
nTPM: 18.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 14.8
Sample A Female 23.0
Sample B Female 14.8
Sample C Male 18.2
Sample D Male 16.6
Dorsal hippocampus
nTPM: 22.9
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.4
Sample A Female 28.9
Sample B Female 21.2
Sample C Male 22.2
Sample D Male 19.4
Entorhinal cortex
nTPM: 18.2
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.0
Sample A Female 20.3
Sample B Female 20.0
Sample C Male 17.5
Sample D Male 15.0
Ventral hippocampus
nTPM: 21.3
Samples: 4

Max nTPM: 25.4
Min nTPM: 14.9
Sample A Female 19.5
Sample B Female 14.9
Sample C Male 25.4
Sample D Male 25.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 21.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.4
Samples: 4

Max nTPM: 19.1
Min nTPM: 17.1
Sample A Male 18.6
Sample B Male 18.9
Sample C Female 19.1
Sample D Female 17.1
Hippocampal formation
nTPM: 21.3
Samples: 4

Max nTPM: 22.3
Min nTPM: 20.1
Sample A Male 21.9
Sample B Male 22.3
Sample C Female 20.1
Sample D Female 20.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
2418 Antisense, RP_Baylor_253940, Mouse strain C57BL/6J (56 days, male) 4.1
2417 Antisense, RP_Baylor_253940, Mouse strain C57BL/6J (56 days, male) 0.8

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