MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.6 nTPM
HPA Brain:98.8 nTPM
GTEx:28.6 nTPM
FANTOM5:111.8 Scaled Tags Per Million
Pig:102.0 nTPM
Mouse:160.9 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.9
2828 Female, age 72, unknown 102.6
2411 Female, age 72, unknown 85.0
1833 Male, age 53, unknown 82.1
2586 Male, age 75, left hemisphere 81.8
1870 Female, age 42, unknown 77.1
1830 Male, age 51, unknown 75.8
1827 Male, age 72, unknown 75.4
2219 Male, age 76, both hemispheres 66.4
2019 Male, age 18, unknown 61.6
2666 Male, age 74, left hemisphere 61.0
Dorsal raphe nucleus
nTPM: 94.8
2047 Male, age 72, unknown 107.2
2750 Male, age 76, both hemispheres 97.7
2298 Female, age 72, unknown 91.3
1828 Male, age 53, unknown 89.2
2016 Female, age 72, unknown 88.7
Inferior colliculus
nTPM: 95.9
1848 Female, age 42, unknown 108.6
1890 Male, age 53, unknown 101.8
2849 Male, age 72, unknown 87.9
2097 Female, age 72, unknown 85.4
Median raphe nucleus
nTPM: 81.5
2220 Male, age 76, midline 81.5
Periaquaductal grey, anterior
nTPM: 76.5
1947 Male, age 18, unknown 81.2
1795 Male, age 51, unknown 79.2
2502 Female, age 75, unknown 69.3
Periaquaductal grey, dorsal
nTPM: 76.0
2464 Female, age 72, unknown 87.6
1840 Male, age 53, unknown 86.9
2850 Male, age 76, both hemispheres 77.5
1831 Male, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 88.4
2140 Male, age 76, both hemispheres 98.0
2053 Male, age 18, unknown 95.0
2272 Male, age 74, both hemispheres 72.4
Pretectal area
nTPM: 71.3
2316 Male, age 76, right hemisphere 85.2
2825 Male, age 18, unknown 84.8
2667 Female, age 75, unknown 82.3
1944 Female, age 72, unknown 76.7
2224 Female, age 72, unknown 76.6
2273 Male, age 74, both hemispheres 71.4
1817 Female, age 42, unknown 71.0
1816 Male, age 51, unknown 60.8
2007 Male, age 72, unknown 60.4
2407 Male, age 75, both hemispheres 58.1
1815 Male, age 53, unknown 57.1
Red nucleus
nTPM: 98.8
2227 Male, age 72, unknown 134.6
2769 Male, age 72, unknown 128.2
1865 Male, age 51, unknown 112.4
2725 Female, age 75, unknown 110.6
2503 Female, age 72, unknown 107.6
1954 Female, age 42, unknown 105.2
1821 Female, age 72, unknown 100.6
2823 Male, age 76, right hemisphere 99.3
1904 Male, age 53, unknown 88.9
2588 Male, age 74, left hemisphere 72.3
2584 Male, age 75, left hemisphere 66.3
2785 Male, age 18, unknown 59.4
Substantia nigra
nTPM: 87.8
2699 Male, age 18, unknown 114.8
1916 Female, age 42, unknown 104.6
2409 Female, age 72, unknown 94.8
1851 Male, age 51, unknown 85.9
1941 Male, age 53, unknown 85.0
1889 Female, age 72, unknown 84.8
2241 Male, age 72, unknown 77.6
2590 Female, age 75, unknown 77.5
2583 Male, age 75, right hemisphere 76.8
2665 Male, age 74, both hemispheres 75.9
Superior colliculus
nTPM: 67.8
1796 Male, age 53, unknown 81.6
2087 Female, age 72, unknown 77.6
1895 Male, age 76, right hemisphere 77.4
2261 Male, age 18, unknown 73.2
1839 Male, age 51, unknown 69.3
1995 Male, age 72, unknown 64.6
2668 Female, age 75, unknown 61.9
2587 Male, age 74, left hemisphere 60.2
1913 Female, age 42, unknown 59.0
2664 Male, age 75, both hemispheres 52.8
Ventral tegmental area
nTPM: 87.0
2223 Female, age 72, unknown 106.3
2410 Female, age 72, unknown 88.1
2218 Male, age 76, both hemispheres 84.9
1915 Female, age 42, unknown 84.5
1942 Male, age 51, unknown 81.3
2021 Male, age 53, unknown 76.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.6
Samples: 183

Max nTPM: 72.7
Min nTPM: 4.0
Std nTPM: 14.6
Median nTPM: 25.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 72.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 72.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 68.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 65.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 59.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 59.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 57.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 57.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 57.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 56.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 111.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.8
FF:10158-103A5 76 years, female 111.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 102.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.5
Samples: 4

Max nTPM: 132.0
Min nTPM: 72.0
Sample A Female 100.5
Sample B Female 72.0
Sample C Male 89.3
Sample D Male 132.0
Midbrain
nTPM: 102.0
Samples: 4

Max nTPM: 109.8
Min nTPM: 98.3
Sample A Female 109.8
Sample B Female 100.0
Sample C Male 98.3
Sample D Male 99.8
Periaqueductal gray
nTPM: 92.9
Samples: 3

Max nTPM: 105.6
Min nTPM: 83.4
Sample B Female 105.6
Sample C Male 89.6
Sample D Male 83.4
Superior colliculi
nTPM: 99.1
Samples: 4

Max nTPM: 124.5
Min nTPM: 57.6
Sample A Female 124.5
Sample B Female 57.6
Sample C Male 97.9
Sample D Male 116.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 180.7
Min nTPM: 148.1
Sample A Male 180.7
Sample B Male 151.4
Sample C Female 148.1
Sample D Female 163.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
370 Antisense, RP_Baylor_103313, Mouse strain C57BL/6J (56 days, male) 1.1
369 Antisense, RP_Baylor_103313, Mouse strain C57BL/6J (56 days, male) 0.3

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