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  • TISSUE

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  • NDRG1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:157.7 nTPM
FANTOM5:197.8 Scaled Tags Per Million
Pig:42.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006881
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 157.7
Samples: 300

Max nTPM: 715.7
Min nTPM: 25.3
Std nTPM: 80.6
Median nTPM: 146.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 715.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 451.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 383.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 371.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 371.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 369.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 355.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 351.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 346.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 342.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 331.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 328.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 328.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 322.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 312.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 299.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 298.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 297.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 296.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 296.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 295.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 289.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 283.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 282.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 275.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 275.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 275.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 275.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 272.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 272.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 271.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 268.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 266.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 261.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 246.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 246.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 245.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 243.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 240.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 236.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 235.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 233.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 226.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 226.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 226.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 225.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 221.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 220.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 216.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 216.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 215.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 215.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 214.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 214.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 212.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 208.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 208.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 207.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 205.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 204.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 204.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 202.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 201.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 201.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 199.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 198.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 198.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 197.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 197.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 196.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 196.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 195.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 193.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 193.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 193.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 189.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 189.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 188.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 188.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 188.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 188.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 187.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 186.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 184.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 184.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 184.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 184.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 183.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 182.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 182.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 181.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 181.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 180.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 180.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 180.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 180.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 176.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 176.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 176.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 175.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 175.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 174.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 174.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 173.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 172.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 172.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 172.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 171.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 171.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 169.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 168.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 168.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 167.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 166.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 166.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 165.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 164.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 164.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 163.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 162.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 161.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 161.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 159.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 159.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 159.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 158.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 158.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 156.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 156.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 156.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 155.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 155.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 153.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 152.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 152.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 152.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 152.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 151.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 151.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 150.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 150.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 150.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 150.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 149.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 149.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 148.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 148.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 147.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 147.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 146.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 146.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 145.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 145.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 145.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 143.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 142.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 141.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 140.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 139.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 139.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 139.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 139.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 138.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 137.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 137.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 136.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 136.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 135.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 135.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 133.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 133.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 132.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 132.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 131.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 129.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 129.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 126.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 126.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 125.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 124.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 122.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 122.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 122.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 122.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 121.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 121.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 120.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 120.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 119.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 119.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 118.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 117.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 116.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 116.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 116.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 116.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 116.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 115.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 115.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 115.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 114.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 113.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 111.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 111.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 109.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 107.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 107.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 106.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 106.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 106.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 106.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 105.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 104.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 104.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 104.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 102.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 101.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 100.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 100.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 99.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 99.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 98.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 98.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 98.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 97.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 97.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 97.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 96.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 96.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 96.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 95.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 95.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 95.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 95.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 95.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 94.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 94.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 94.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 92.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 91.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 90.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 90.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 89.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 88.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 88.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 88.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 85.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 85.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 85.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 84.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 82.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 81.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 81.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 80.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 78.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 77.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 76.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 76.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 75.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 74.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 74.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 74.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 73.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 73.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 72.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 72.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 71.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 71.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 70.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 70.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 69.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 69.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 68.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 68.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 67.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 66.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 65.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 64.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 64.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 63.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 62.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 57.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 56.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 56.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 54.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 51.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 49.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 49.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 48.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 46.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 45.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 197.8
FF:10164-103B2 76 years, female 197.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.0
Pig sample Sample description nTPM
Caudate
nTPM: 42.0
Samples: 4

Max nTPM: 52.5
Min nTPM: 35.3
Sample A Female 52.5
Sample B Female 38.8
Sample C Male 41.4
Sample D Male 35.3

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