MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.7 nTPM
HPA Brain:19.6 nTPM
GTEx:2.7 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:2.1 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.0
2019 Male, age 18, unknown 6.5
1870 Female, age 42, unknown 5.6
1827 Male, age 72, unknown 5.5
1830 Male, age 51, unknown 5.4
2828 Female, age 72, unknown 5.2
1833 Male, age 53, unknown 4.7
2219 Male, age 76, both hemispheres 4.6
2586 Male, age 75, left hemisphere 4.4
2411 Female, age 72, unknown 4.2
2666 Male, age 74, left hemisphere 3.9
Dorsal raphe nucleus
nTPM: 11.2
2298 Female, age 72, unknown 17.4
2016 Female, age 72, unknown 17.0
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 7.9
2750 Male, age 76, both hemispheres 4.2
Inferior colliculus
nTPM: 7.1
2849 Male, age 72, unknown 8.3
2097 Female, age 72, unknown 7.3
1848 Female, age 42, unknown 6.8
1890 Male, age 53, unknown 5.8
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 9.7
1795 Male, age 51, unknown 12.0
1947 Male, age 18, unknown 8.8
2502 Female, age 75, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 14.9
2850 Male, age 76, both hemispheres 26.6
1840 Male, age 53, unknown 13.9
1831 Male, age 72, unknown 10.0
2464 Female, age 72, unknown 9.2
Periaquaductal grey, lateral
nTPM: 19.6
2272 Male, age 74, both hemispheres 27.2
2140 Male, age 76, both hemispheres 22.1
2053 Male, age 18, unknown 9.4
Pretectal area
nTPM: 8.5
2273 Male, age 74, both hemispheres 25.6
2224 Female, age 72, unknown 12.9
2825 Male, age 18, unknown 7.9
2407 Male, age 75, both hemispheres 7.0
2667 Female, age 75, unknown 6.7
1944 Female, age 72, unknown 6.0
2316 Male, age 76, right hemisphere 6.0
1816 Male, age 51, unknown 5.9
2007 Male, age 72, unknown 5.5
1817 Female, age 42, unknown 4.8
1815 Male, age 53, unknown 4.7
Red nucleus
nTPM: 4.2
2725 Female, age 75, unknown 6.2
2785 Male, age 18, unknown 5.5
2227 Male, age 72, unknown 4.5
1821 Female, age 72, unknown 4.4
2503 Female, age 72, unknown 4.4
2769 Male, age 72, unknown 4.4
1954 Female, age 42, unknown 4.3
1865 Male, age 51, unknown 3.8
2584 Male, age 75, left hemisphere 3.4
1904 Male, age 53, unknown 3.3
2588 Male, age 74, left hemisphere 3.3
2823 Male, age 76, right hemisphere 3.3
Substantia nigra
nTPM: 6.4
1941 Male, age 53, unknown 14.2
2699 Male, age 18, unknown 7.1
2241 Male, age 72, unknown 6.4
1889 Female, age 72, unknown 5.5
2409 Female, age 72, unknown 5.5
1916 Female, age 42, unknown 5.4
1851 Male, age 51, unknown 5.3
2583 Male, age 75, right hemisphere 5.2
2590 Female, age 75, unknown 5.2
2665 Male, age 74, both hemispheres 4.1
Superior colliculus
nTPM: 6.7
1995 Male, age 72, unknown 9.8
2587 Male, age 74, left hemisphere 9.0
2664 Male, age 75, both hemispheres 8.4
2261 Male, age 18, unknown 6.7
1839 Male, age 51, unknown 6.5
2668 Female, age 75, unknown 6.5
1913 Female, age 42, unknown 5.1
1796 Male, age 53, unknown 5.0
1895 Male, age 76, right hemisphere 4.8
2087 Female, age 72, unknown 4.8
Ventral tegmental area
nTPM: 5.8
2021 Male, age 53, unknown 7.7
1942 Male, age 51, unknown 6.4
1915 Female, age 42, unknown 6.2
2218 Male, age 76, both hemispheres 5.5
2223 Female, age 72, unknown 4.9
2410 Female, age 72, unknown 4.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.7
Samples: 183

Max nTPM: 12.3
Min nTPM: 0.9
Std nTPM: 1.5
Median nTPM: 2.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 12.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 11.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 8.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 7.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 6.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 5.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 30.6
Min nTPM: 21.1
Sample A Female 30.6
Sample B Female 21.1
Sample C Male 25.5
Sample D Male 26.0
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 44.3
Min nTPM: 13.9
Sample A Female 18.2
Sample B Female 44.3
Sample C Male 13.9
Sample D Male 31.7
Periaqueductal gray
nTPM: 45.9
Samples: 3

Max nTPM: 49.6
Min nTPM: 39.8
Sample B Female 39.8
Sample C Male 48.4
Sample D Male 49.6
Superior colliculi
nTPM: 26.4
Samples: 4

Max nTPM: 34.5
Min nTPM: 18.5
Sample A Female 34.5
Sample B Female 18.5
Sample C Male 20.7
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.4
Sample A Male 2.4
Sample B Male 2.0
Sample C Female 2.6
Sample D Female 1.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
68745221 Antisense, RP_050210_01_E02, Mouse strain C57BL/6J (56 days, male) 1.9

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