MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:53.3 nTPM
GTEx:16.9 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:67.5 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2411 Female, age 72, unknown 50.1
1870 Female, age 42, unknown 46.9
1830 Male, age 51, unknown 44.4
1833 Male, age 53, unknown 40.9
1827 Male, age 72, unknown 37.4
2828 Female, age 72, unknown 34.9
2019 Male, age 18, unknown 29.6
2219 Male, age 76, both hemispheres 28.6
2666 Male, age 74, left hemisphere 27.5
2586 Male, age 75, left hemisphere 18.1
Dorsal raphe nucleus
nTPM: 40.8
2750 Male, age 76, both hemispheres 54.7
2298 Female, age 72, unknown 43.7
2047 Male, age 72, unknown 39.7
1828 Male, age 53, unknown 34.4
2016 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 31.9
1848 Female, age 42, unknown 35.5
2097 Female, age 72, unknown 33.5
2849 Male, age 72, unknown 30.6
1890 Male, age 53, unknown 27.9
Median raphe nucleus
nTPM: 53.3
2220 Male, age 76, midline 53.3
Periaquaductal grey, anterior
nTPM: 38.8
1947 Male, age 18, unknown 45.6
2502 Female, age 75, unknown 41.7
1795 Male, age 51, unknown 29.2
Periaquaductal grey, dorsal
nTPM: 31.8
2850 Male, age 76, both hemispheres 39.9
2464 Female, age 72, unknown 35.1
1831 Male, age 72, unknown 28.3
1840 Male, age 53, unknown 23.7
Periaquaductal grey, lateral
nTPM: 36.7
2272 Male, age 74, both hemispheres 44.6
2053 Male, age 18, unknown 35.8
2140 Male, age 76, both hemispheres 29.7
Pretectal area
nTPM: 33.4
2273 Male, age 74, both hemispheres 44.9
2825 Male, age 18, unknown 39.5
1815 Male, age 53, unknown 36.9
2007 Male, age 72, unknown 35.2
2224 Female, age 72, unknown 34.3
2667 Female, age 75, unknown 32.7
2316 Male, age 76, right hemisphere 32.1
1817 Female, age 42, unknown 32.0
2407 Male, age 75, both hemispheres 28.9
1816 Male, age 51, unknown 28.3
1944 Female, age 72, unknown 22.8
Red nucleus
nTPM: 34.5
1865 Male, age 51, unknown 47.9
1821 Female, age 72, unknown 42.4
1904 Male, age 53, unknown 37.6
1954 Female, age 42, unknown 36.2
2503 Female, age 72, unknown 35.0
2785 Male, age 18, unknown 33.9
2588 Male, age 74, left hemisphere 33.2
2769 Male, age 72, unknown 32.3
2227 Male, age 72, unknown 32.0
2725 Female, age 75, unknown 30.7
2823 Male, age 76, right hemisphere 29.6
2584 Male, age 75, left hemisphere 22.8
Substantia nigra
nTPM: 22.5
1889 Female, age 72, unknown 31.5
1941 Male, age 53, unknown 30.2
1916 Female, age 42, unknown 26.9
2241 Male, age 72, unknown 23.7
2590 Female, age 75, unknown 21.2
1851 Male, age 51, unknown 19.9
2583 Male, age 75, right hemisphere 19.9
2409 Female, age 72, unknown 18.1
2665 Male, age 74, both hemispheres 17.0
2699 Male, age 18, unknown 16.4
Superior colliculus
nTPM: 32.7
2587 Male, age 74, left hemisphere 40.2
1839 Male, age 51, unknown 36.7
1895 Male, age 76, right hemisphere 36.5
2261 Male, age 18, unknown 35.3
2668 Female, age 75, unknown 34.2
1995 Male, age 72, unknown 33.3
1913 Female, age 42, unknown 32.9
1796 Male, age 53, unknown 29.4
2087 Female, age 72, unknown 25.0
2664 Male, age 75, both hemispheres 23.9
Ventral tegmental area
nTPM: 33.8
2223 Female, age 72, unknown 49.0
2218 Male, age 76, both hemispheres 35.8
2410 Female, age 72, unknown 34.1
2021 Male, age 53, unknown 31.3
1942 Male, age 51, unknown 26.7
1915 Female, age 42, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 183

Max nTPM: 44.3
Min nTPM: 4.3
Std nTPM: 7.7
Median nTPM: 15.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 44.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 38.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 38.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 37.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 37.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 35.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 33.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 31.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 31.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 31.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.1
Samples: 4

Max nTPM: 76.4
Min nTPM: 49.5
Sample A Female 76.4
Sample B Female 49.5
Sample C Male 66.9
Sample D Male 67.4
Midbrain
nTPM: 75.1
Samples: 4

Max nTPM: 125.8
Min nTPM: 53.7
Sample A Female 125.8
Sample B Female 64.1
Sample C Male 56.6
Sample D Male 53.7
Periaqueductal gray
nTPM: 62.2
Samples: 3

Max nTPM: 69.3
Min nTPM: 56.3
Sample B Female 61.1
Sample C Male 69.3
Sample D Male 56.3
Superior colliculi
nTPM: 57.3
Samples: 4

Max nTPM: 63.2
Min nTPM: 48.6
Sample A Female 63.2
Sample B Female 48.6
Sample C Male 59.7
Sample D Male 57.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 67.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.4
Samples: 4

Max nTPM: 69.7
Min nTPM: 66.1
Sample A Male 66.1
Sample B Male 67.0
Sample C Female 66.9
Sample D Female 69.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69262284 Antisense, RP_050303_01_E12, Mouse strain C57BL/6J (56 days, male) 7.8
70231996 Antisense, RP_050303_01_E12, Mouse strain C57BL/6J (56 days, male) 3.5

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