MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:36.3 nTPM
GTEx:12.3 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:14.3 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.6
2019 Male, age 18, unknown 37.8
2586 Male, age 75, left hemisphere 34.4
1827 Male, age 72, unknown 30.9
2666 Male, age 74, left hemisphere 27.8
2828 Female, age 72, unknown 26.6
2411 Female, age 72, unknown 25.3
2219 Male, age 76, both hemispheres 24.2
1833 Male, age 53, unknown 21.0
1870 Female, age 42, unknown 20.3
1830 Male, age 51, unknown 17.9
Dorsal raphe nucleus
nTPM: 25.9
2298 Female, age 72, unknown 29.3
2750 Male, age 76, both hemispheres 26.9
2047 Male, age 72, unknown 25.9
1828 Male, age 53, unknown 25.1
2016 Female, age 72, unknown 22.2
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 29.0
1890 Male, age 53, unknown 25.5
1848 Female, age 42, unknown 19.3
2849 Male, age 72, unknown 18.5
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Periaquaductal grey, anterior
nTPM: 27.7
1795 Male, age 51, unknown 34.2
2502 Female, age 75, unknown 27.7
1947 Male, age 18, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 24.1
2850 Male, age 76, both hemispheres 27.7
1831 Male, age 72, unknown 24.7
2464 Female, age 72, unknown 22.4
1840 Male, age 53, unknown 21.6
Periaquaductal grey, lateral
nTPM: 29.0
2272 Male, age 74, both hemispheres 30.8
2140 Male, age 76, both hemispheres 30.3
2053 Male, age 18, unknown 25.7
Pretectal area
nTPM: 36.3
1816 Male, age 51, unknown 55.8
2007 Male, age 72, unknown 52.7
1817 Female, age 42, unknown 48.8
1944 Female, age 72, unknown 46.3
1815 Male, age 53, unknown 43.8
2273 Male, age 74, both hemispheres 33.0
2224 Female, age 72, unknown 25.9
2667 Female, age 75, unknown 25.1
2316 Male, age 76, right hemisphere 23.9
2825 Male, age 18, unknown 22.7
2407 Male, age 75, both hemispheres 21.4
Red nucleus
nTPM: 24.0
2785 Male, age 18, unknown 35.3
2725 Female, age 75, unknown 30.8
2503 Female, age 72, unknown 26.0
2584 Male, age 75, left hemisphere 24.3
1821 Female, age 72, unknown 23.3
1904 Male, age 53, unknown 22.9
2588 Male, age 74, left hemisphere 22.9
1954 Female, age 42, unknown 21.1
2823 Male, age 76, right hemisphere 20.8
2227 Male, age 72, unknown 20.5
2769 Male, age 72, unknown 20.3
1865 Male, age 51, unknown 20.1
Substantia nigra
nTPM: 28.2
1889 Female, age 72, unknown 39.6
1916 Female, age 42, unknown 32.1
1851 Male, age 51, unknown 31.9
2583 Male, age 75, right hemisphere 29.5
2590 Female, age 75, unknown 29.0
2665 Male, age 74, both hemispheres 28.6
1941 Male, age 53, unknown 26.9
2241 Male, age 72, unknown 23.6
2409 Female, age 72, unknown 22.9
2699 Male, age 18, unknown 17.9
Superior colliculus
nTPM: 28.2
2261 Male, age 18, unknown 42.0
2087 Female, age 72, unknown 35.7
1796 Male, age 53, unknown 30.6
1913 Female, age 42, unknown 29.5
1995 Male, age 72, unknown 27.7
2668 Female, age 75, unknown 27.0
2587 Male, age 74, left hemisphere 25.0
2664 Male, age 75, both hemispheres 22.5
1839 Male, age 51, unknown 21.2
1895 Male, age 76, right hemisphere 20.7
Ventral tegmental area
nTPM: 24.6
2410 Female, age 72, unknown 29.1
2218 Male, age 76, both hemispheres 26.8
1915 Female, age 42, unknown 25.9
2021 Male, age 53, unknown 22.8
1942 Male, age 51, unknown 22.6
2223 Female, age 72, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 183

Max nTPM: 23.5
Min nTPM: 5.4
Std nTPM: 2.8
Median nTPM: 11.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 23.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 20.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 19.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 19.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 18.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 17.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 17.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 16.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 6.4
Sample A Female 12.5
Sample B Female 8.7
Sample C Male 10.3
Sample D Male 6.4
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.9
Sample A Female 10.1
Sample B Female 9.9
Sample C Male 10.5
Sample D Male 10.8
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 9.2
Min nTPM: 7.9
Sample B Female 8.5
Sample C Male 9.2
Sample D Male 7.9
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.8
Sample A Female 12.6
Sample B Female 12.8
Sample C Male 10.6
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.5
Sample A Male 13.5
Sample B Male 14.0
Sample C Female 15.5
Sample D Female 14.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69734797 Antisense, RP_050503_01_C09, Mouse strain C57BL/6J (56 days, male) 0.4

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