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  • PPP2CB
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:213.6 nTPM
HPA Brain:173.6 nTPM
GTEx:213.6 nTPM
FANTOM5:142.9 Scaled Tags Per Million
Pig:79.3 nTPM
Mouse:140.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.6
Sample id Sample description nTPM
Amygdala
nTPM: 173.6
2695 Female, age 67, right hemisphere 189.2
2514 Male, age 75, right hemisphere 181.2
2814 Male, age 76, right hemisphere 180.9
1987 Female, age 91, left hemisphere 162.3
2517 Female, age 94, left hemisphere 154.5
Basal amygdala
nTPM: 145.0
2609 Male, age 75, right hemisphere 199.9
1955 Male, age 76, both hemispheres 143.9
2110 Male, age 80, left hemisphere 139.1
2827 Female, age 67, right hemisphere 135.9
2685 Female, age 94, left hemisphere 130.5
2243 Female, age 91, right hemisphere 120.9
Central amygdala
nTPM: 157.6
2515 Male, age 75, right hemisphere 182.4
2826 Female, age 94, left hemisphere 181.4
1905 Male, age 76, both hemispheres 175.0
2239 Male, age 80, left hemisphere 132.2
2701 Female, age 91, right hemisphere 117.2
Corticomedial amygdala
nTPM: 141.0
2428 Male, age 75, right hemisphere 202.8
2829 Male, age 80, left hemisphere 150.4
2240 Male, age 76, both hemispheres 125.9
2429 Female, age 94, left hemisphere 125.4
2242 Female, age 91, right hemisphere 124.3
2535 Female, age 67, right hemisphere 117.5
Lateral amygdala
nTPM: 151.7
2516 Male, age 75, right hemisphere 199.1
2830 Female, age 67, right hemisphere 176.9
1883 Male, age 76, both hemispheres 154.7
2534 Female, age 94, left hemisphere 140.4
2256 Male, age 80, left hemisphere 134.7
2255 Female, age 91, right hemisphere 104.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 213.6
Samples: 181

Max nTPM: 476.4
Min nTPM: 123.2
Std nTPM: 54.9
Median nTPM: 205.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 476.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 416.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 392.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 388.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 379.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 329.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 326.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 307.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 306.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 299.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 292.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 292.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 289.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 289.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 284.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 282.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 281.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 279.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 278.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 277.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 277.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 277.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 275.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 272.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 271.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 265.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 260.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 258.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 258.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 257.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 256.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 255.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 254.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 254.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 253.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 253.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 253.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 252.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 251.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 250.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 250.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 250.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 244.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 244.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 244.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 243.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 239.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 239.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 238.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 235.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 235.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 234.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 230.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 230.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 229.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 227.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 227.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 225.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 225.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 224.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 224.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 224.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 224.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 223.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 223.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 223.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 222.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 220.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 219.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 219.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 219.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 218.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 217.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 217.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 215.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 215.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 215.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 214.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 212.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 212.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 212.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 212.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 210.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 209.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 209.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 209.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 208.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 207.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 207.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 206.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 205.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 205.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 204.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 204.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 204.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 204.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 203.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 202.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 201.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 199.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 199.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 198.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 197.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 197.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 197.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 196.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 195.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 194.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 193.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 193.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 192.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 191.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 189.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 188.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 188.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 187.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 187.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 186.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 185.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 185.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 183.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 183.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 182.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 181.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 181.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 179.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 179.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 178.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 177.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 176.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 175.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 174.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 173.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 173.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 173.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 172.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 172.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 172.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 171.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 170.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 169.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 168.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 167.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 166.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 165.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 165.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 164.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 164.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 162.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 162.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 162.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 160.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 158.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 158.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 157.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 156.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 155.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 154.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 154.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 152.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 148.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 148.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 147.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 146.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 145.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 141.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 140.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 140.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 136.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 129.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 126.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 124.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 123.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 142.9
FF:10151-102I7 76 years, female 142.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.3
Pig sample Sample description nTPM
Amygdala
nTPM: 79.3
Samples: 4

Max nTPM: 95.7
Min nTPM: 66.6
Sample A Female 95.7
Sample B Female 79.3
Sample C Male 66.6
Sample D Male 75.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 140.5
Samples: 4

Max nTPM: 144.1
Min nTPM: 136.4
Sample A Male 144.1
Sample B Male 141.8
Sample C Female 139.8
Sample D Female 136.4

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