MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:507.1 nTPM
HPA Brain:763.7 nTPM
GTEx:507.1 nTPM
FANTOM5:1905.3 Scaled Tags Per Million
Pig:2338.6 nTPM
Mouse:728.8 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 763.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 697.7
2219 Male, age 76, both hemispheres 904.0
2411 Female, age 72, unknown 857.7
1830 Male, age 51, unknown 753.5
1833 Male, age 53, unknown 744.1
1870 Female, age 42, unknown 732.2
2019 Male, age 18, unknown 660.0
2828 Female, age 72, unknown 658.9
1827 Male, age 72, unknown 611.0
2666 Male, age 74, left hemisphere 592.4
2586 Male, age 75, left hemisphere 463.4
Dorsal raphe nucleus
nTPM: 546.3
2750 Male, age 76, both hemispheres 878.7
1828 Male, age 53, unknown 541.3
2047 Male, age 72, unknown 443.0
2298 Female, age 72, unknown 435.3
2016 Female, age 72, unknown 433.1
Inferior colliculus
nTPM: 482.4
2849 Male, age 72, unknown 598.7
1848 Female, age 42, unknown 490.0
2097 Female, age 72, unknown 423.8
1890 Male, age 53, unknown 417.1
Median raphe nucleus
nTPM: 692.9
2220 Male, age 76, midline 692.9
Periaquaductal grey, anterior
nTPM: 496.5
1947 Male, age 18, unknown 528.9
1795 Male, age 51, unknown 519.5
2502 Female, age 75, unknown 441.2
Periaquaductal grey, dorsal
nTPM: 392.4
2464 Female, age 72, unknown 511.5
1831 Male, age 72, unknown 419.2
1840 Male, age 53, unknown 338.2
2850 Male, age 76, both hemispheres 300.6
Periaquaductal grey, lateral
nTPM: 434.1
2272 Male, age 74, both hemispheres 583.4
2053 Male, age 18, unknown 441.0
2140 Male, age 76, both hemispheres 278.0
Pretectal area
nTPM: 565.6
2407 Male, age 75, both hemispheres 682.9
1815 Male, age 53, unknown 642.8
2007 Male, age 72, unknown 642.3
1817 Female, age 42, unknown 618.5
1816 Male, age 51, unknown 574.1
1944 Female, age 72, unknown 542.3
2825 Male, age 18, unknown 538.7
2667 Female, age 75, unknown 534.9
2224 Female, age 72, unknown 492.9
2273 Male, age 74, both hemispheres 488.6
2316 Male, age 76, right hemisphere 463.5
Red nucleus
nTPM: 763.7
2823 Male, age 76, right hemisphere 888.1
2503 Female, age 72, unknown 800.0
1904 Male, age 53, unknown 789.7
2588 Male, age 74, left hemisphere 781.9
1821 Female, age 72, unknown 780.0
1865 Male, age 51, unknown 761.5
2227 Male, age 72, unknown 759.6
2769 Male, age 72, unknown 756.8
2785 Male, age 18, unknown 749.0
2584 Male, age 75, left hemisphere 738.8
2725 Female, age 75, unknown 724.0
1954 Female, age 42, unknown 634.5
Substantia nigra
nTPM: 651.7
1916 Female, age 42, unknown 775.3
1941 Male, age 53, unknown 764.7
2583 Male, age 75, right hemisphere 717.8
1851 Male, age 51, unknown 711.2
2590 Female, age 75, unknown 697.0
2699 Male, age 18, unknown 684.5
1889 Female, age 72, unknown 643.4
2409 Female, age 72, unknown 622.4
2241 Male, age 72, unknown 501.3
2665 Male, age 74, both hemispheres 399.7
Superior colliculus
nTPM: 617.2
1913 Female, age 42, unknown 807.9
2587 Male, age 74, left hemisphere 737.9
2668 Female, age 75, unknown 689.2
1995 Male, age 72, unknown 663.3
1796 Male, age 53, unknown 628.5
1895 Male, age 76, right hemisphere 605.2
1839 Male, age 51, unknown 575.6
2261 Male, age 18, unknown 550.2
2087 Female, age 72, unknown 537.4
2664 Male, age 75, both hemispheres 376.9
Ventral tegmental area
nTPM: 706.8
2223 Female, age 72, unknown 959.9
2410 Female, age 72, unknown 775.3
2218 Male, age 76, both hemispheres 772.7
1915 Female, age 42, unknown 629.2
1942 Male, age 51, unknown 556.9
2021 Male, age 53, unknown 546.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 507.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 507.1
Samples: 183

Max nTPM: 1764.2
Min nTPM: 101.6
Std nTPM: 261.6
Median nTPM: 462.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1764.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1382.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1313.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1312.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1230.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1092.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1091.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1083.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1018.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1015.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 988.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1905.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1905.3
FF:10158-103A5 76 years, female 1905.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2338.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2127.0
Samples: 4

Max nTPM: 3371.4
Min nTPM: 1099.7
Sample A Female 2115.5
Sample B Female 1099.7
Sample C Male 1921.4
Sample D Male 3371.4
Midbrain
nTPM: 2338.6
Samples: 4

Max nTPM: 4698.4
Min nTPM: 1154.5
Sample A Female 4698.4
Sample B Female 2107.0
Sample C Male 1394.4
Sample D Male 1154.5
Periaqueductal gray
nTPM: 1447.8
Samples: 3

Max nTPM: 1611.6
Min nTPM: 1176.7
Sample B Female 1611.6
Sample C Male 1176.7
Sample D Male 1555.1
Superior colliculi
nTPM: 1712.1
Samples: 4

Max nTPM: 2345.7
Min nTPM: 607.7
Sample A Female 2068.9
Sample B Female 607.7
Sample C Male 1826.2
Sample D Male 2345.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 728.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 728.8
Samples: 4

Max nTPM: 783.3
Min nTPM: 697.9
Sample A Male 783.3
Sample B Male 697.9
Sample C Female 710.1
Sample D Female 723.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
1081 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.5
1082 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.0
1083 Sense, RPS_Baylor_37062, Mouse strain C57BL/6J (56 days, male) 0.0

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