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  • RPS16
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:840.2 nTPM
HPA Brain:319.7 nTPM
GTEx:840.2 nTPM
FANTOM5:223.8 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:88.8 nTPM
Allen mouse:10.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.7
Sample id Sample description nTPM
Amygdala
nTPM: 313.2
2695 Female, age 67, right hemisphere 411.6
2514 Male, age 75, right hemisphere 320.3
2517 Female, age 94, left hemisphere 285.1
2814 Male, age 76, right hemisphere 275.0
1987 Female, age 91, left hemisphere 274.1
Basal amygdala
nTPM: 271.7
2827 Female, age 67, right hemisphere 414.1
2609 Male, age 75, right hemisphere 312.1
2685 Female, age 94, left hemisphere 248.1
2110 Male, age 80, left hemisphere 247.7
1955 Male, age 76, both hemispheres 206.5
2243 Female, age 91, right hemisphere 201.7
Central amygdala
nTPM: 298.0
2826 Female, age 94, left hemisphere 497.2
2515 Male, age 75, right hemisphere 304.5
1905 Male, age 76, both hemispheres 244.0
2239 Male, age 80, left hemisphere 235.4
2701 Female, age 91, right hemisphere 209.1
Corticomedial amygdala
nTPM: 242.5
2535 Female, age 67, right hemisphere 318.5
2428 Male, age 75, right hemisphere 289.7
2829 Male, age 80, left hemisphere 225.9
2429 Female, age 94, left hemisphere 214.7
2240 Male, age 76, both hemispheres 209.8
2242 Female, age 91, right hemisphere 196.6
Lateral amygdala
nTPM: 319.7
2830 Female, age 67, right hemisphere 505.9
2516 Male, age 75, right hemisphere 368.2
2534 Female, age 94, left hemisphere 358.0
2256 Male, age 80, left hemisphere 262.3
1883 Male, age 76, both hemispheres 214.4
2255 Female, age 91, right hemisphere 209.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

840.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 840.2
Samples: 181

Max nTPM: 2548.9
Min nTPM: 362.7
Std nTPM: 318.5
Median nTPM: 772.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2548.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2201.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2061.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1783.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1721.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1649.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1515.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1450.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1405.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1405.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1357.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1355.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1280.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1254.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1246.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1244.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1213.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1211.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1206.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1190.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1188.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1155.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1152.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1143.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1137.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1123.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1117.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1108.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1096.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1087.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1075.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1062.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1054.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1045.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1036.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1032.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1019.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1015.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1010.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 998.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 998.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 996.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 977.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 958.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 953.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 953.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 943.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 937.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 930.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 929.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 929.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 925.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 922.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 921.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 916.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 898.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 897.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 890.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 883.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 865.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 855.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 852.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 846.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 846.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 845.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 844.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 844.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 843.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 843.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 841.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 835.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 819.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 816.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 816.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 811.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 811.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 807.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 804.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 803.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 801.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 797.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 796.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 794.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 792.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 788.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 784.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 784.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 782.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 778.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 773.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 772.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 769.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 769.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 769.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 767.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 759.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 757.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 757.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 755.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 752.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 752.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 751.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 745.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 743.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 742.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 741.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 739.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 737.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 726.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 722.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 721.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 720.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 717.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 714.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 714.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 713.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 709.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 707.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 676.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 675.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 674.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 674.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 671.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 665.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 662.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 661.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 658.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 658.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 657.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 654.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 651.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 643.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 640.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 640.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 634.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 633.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 631.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 630.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 629.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 618.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 616.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 616.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 612.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 611.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 609.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 608.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 605.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 599.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 599.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 596.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 593.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 584.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 583.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 574.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 569.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 568.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 568.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 567.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 553.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 551.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 549.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 547.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 539.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 528.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 524.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 518.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 511.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 511.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 509.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 501.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 495.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 494.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 489.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 483.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 468.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 449.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 443.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 429.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 400.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 375.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 362.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

223.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 223.8
FF:10151-102I7 76 years, female 223.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 88.8
Samples: 4

Max nTPM: 102.6
Min nTPM: 80.6
Sample A Male 86.8
Sample B Male 80.6
Sample C Female 102.6
Sample D Female 85.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.9
69818379 Antisense, RP_050510_04_H09, Mouse strain C57BL/6J (56 days, male) 10.9

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