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RPS16
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPS16
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:706.4 nTPM
FANTOM5:277.5 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA064222
Glial cells Low
Neuronal cells High

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

706.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 706.4
Samples: 300

Max nTPM: 1633.7
Min nTPM: 301.3
Std nTPM: 197.5
Median nTPM: 681.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1633.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1449.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1443.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1436.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1338.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1259.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1222.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1202.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1172.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1133.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1131.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1103.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1095.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1090.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1080.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1055.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1033.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1031.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1028.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1025.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1018.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1005.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 999.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 987.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 976.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 957.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 956.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 954.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 949.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 949.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 942.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 935.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 933.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 921.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 921.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 906.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 904.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 899.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 897.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 890.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 890.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 883.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 878.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 863.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 863.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 861.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 857.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 857.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 854.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 851.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 850.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 847.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 847.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 844.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 843.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 842.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 841.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 840.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 839.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 839.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 839.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 837.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 835.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 831.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 830.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 826.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 826.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 823.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 819.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 814.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 814.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 811.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 805.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 805.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 799.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 799.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 797.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 795.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 794.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 793.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 792.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 790.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 790.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 787.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 785.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 780.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 779.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 777.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 773.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 771.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 771.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 771.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 767.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 765.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 765.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 765.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 765.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 764.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 764.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 762.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 761.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 759.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 758.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 756.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 754.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 753.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 752.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 752.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 749.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 748.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 746.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 745.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 743.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 741.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 740.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 737.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 730.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 730.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 730.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 726.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 725.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 720.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 719.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 719.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 716.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 713.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 711.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 710.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 710.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 708.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 706.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 704.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 704.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 702.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 700.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 699.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 698.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 698.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 695.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 693.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 693.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 692.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 692.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 692.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 691.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 687.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 686.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 686.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 684.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 682.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 681.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 681.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 681.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 680.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 678.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 677.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 677.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 677.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 677.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 676.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 674.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 673.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 671.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 670.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 668.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 667.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 666.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 666.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 664.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 662.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 660.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 659.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 659.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 653.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 650.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 650.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 647.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 646.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 646.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 645.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 645.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 643.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 643.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 641.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 637.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 636.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 636.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 633.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 629.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 623.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 623.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 623.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 623.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 622.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 621.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 619.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 616.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 613.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 612.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 609.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 606.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 605.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 605.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 605.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 600.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 600.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 600.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 600.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 600.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 596.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 596.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 595.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 593.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 592.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 592.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 591.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 591.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 586.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 585.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 582.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 582.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 581.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 580.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 580.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 578.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 576.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 575.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 574.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 573.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 572.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 570.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 564.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 560.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 558.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 554.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 554.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 554.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 553.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 548.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 546.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 543.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 541.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 538.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 533.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 531.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 530.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 528.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 528.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 527.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 525.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 524.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 523.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 522.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 519.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 519.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 518.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 514.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 511.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 511.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 508.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 507.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 506.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 506.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 503.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 502.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 501.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 495.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 494.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 493.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 492.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 490.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 488.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 480.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 477.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 476.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 475.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 472.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 466.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 465.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 461.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 459.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 457.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 457.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 455.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 446.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 438.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 437.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 435.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 430.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 412.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 411.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 411.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 409.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 395.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 384.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 372.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 354.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 314.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 307.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 301.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

277.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 277.5
FF:10164-103B2 76 years, female 277.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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