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  • TISSUE

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  • APLP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:298.6 nTPM
FANTOM5:153.6 Scaled Tags Per Million
Pig:466.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA028970Antibody HPA028971
Glial cells LowMedium
Neuronal cells MediumNot detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 298.6
Samples: 300

Max nTPM: 631.6
Min nTPM: 58.2
Std nTPM: 112.9
Median nTPM: 300.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 631.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 606.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 600.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 548.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 545.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 517.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 512.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 509.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 508.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 501.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 498.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 498.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 496.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 495.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 489.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 480.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 479.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 475.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 462.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 460.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 459.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 459.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 458.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 454.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 454.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 451.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 450.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 449.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 448.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 447.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 447.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 446.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 446.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 441.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 441.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 441.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 440.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 440.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 436.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 434.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 433.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 433.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 433.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 430.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 428.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 427.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 425.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 424.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 421.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 418.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 417.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 414.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 411.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 411.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 409.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 408.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 406.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 404.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 398.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 395.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 393.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 393.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 391.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 390.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 389.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 388.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 387.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 382.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 382.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 377.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 376.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 376.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 376.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 375.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 375.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 371.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 369.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 368.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 367.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 367.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 367.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 366.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 366.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 365.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 365.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 363.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 360.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 359.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 358.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 358.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 357.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 356.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 355.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 355.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 354.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 354.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 352.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 352.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 352.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 351.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 350.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 349.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 347.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 345.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 343.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 343.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 341.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 340.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 338.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 336.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 335.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 335.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 335.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 332.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 332.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 331.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 330.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 329.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 329.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 329.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 329.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 327.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 326.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 326.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 323.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 323.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 323.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 322.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 321.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 319.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 318.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 316.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 316.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 314.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 314.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 311.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 311.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 311.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 311.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 309.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 309.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 307.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 307.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 306.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 304.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 303.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 303.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 302.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 301.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 300.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 300.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 300.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 300.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 299.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 294.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 293.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 293.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 292.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 292.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 292.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 292.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 291.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 290.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 289.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 288.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 286.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 283.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 281.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 280.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 280.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 278.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 278.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 277.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 277.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 274.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 271.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 271.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 271.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 267.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 267.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 267.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 266.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 266.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 265.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 264.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 261.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 260.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 260.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 259.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 259.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 257.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 253.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 252.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 252.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 252.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 252.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 252.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 252.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 252.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 251.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 249.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 248.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 247.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 246.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 246.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 243.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 243.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 242.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 240.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 240.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 239.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 238.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 238.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 237.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 233.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 232.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 231.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 231.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 224.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 222.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 217.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 216.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 213.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 211.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 211.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 211.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 211.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 210.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 208.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 207.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 203.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 203.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 201.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 200.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 199.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 199.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 199.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 198.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 198.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 196.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 194.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 193.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 192.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 186.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 186.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 185.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 184.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 183.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 181.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 181.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 175.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 173.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 167.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 167.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 164.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 163.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 161.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 157.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 153.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 152.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 151.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 148.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 148.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 147.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 146.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 145.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 144.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 142.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 142.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 142.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 141.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 139.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 139.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 138.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 138.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 138.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 137.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 132.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 132.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 128.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 124.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 120.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 117.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 116.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 115.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 115.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 114.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 112.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 111.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 111.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 109.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 106.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 103.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 96.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 94.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 93.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 88.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 80.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 70.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 58.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 153.6
FF:10164-103B2 76 years, female 153.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.5
Pig sample Sample description nTPM
Caudate
nTPM: 466.6
Samples: 4

Max nTPM: 530.6
Min nTPM: 416.5
Sample A Female 416.5
Sample B Female 474.8
Sample C Male 530.6
Sample D Male 444.3

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