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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:150.9 nTPM
HPA Brain:86.9 nTPM
GTEx:150.9 nTPM
FANTOM5:41.1 Scaled Tags Per Million
Pig:137.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 81.5
1981 Female, age 72, midline 94.6
2194 Female, age 79, both hemispheres 91.6
2816 Male, age 47, midline 76.8
2565 Male, age 75, midline 73.0
2048 Male, age 55, midline 71.7
Cervical spinal cord, dorsal horn
nTPM: 75.8
2173 Female, age 72, unknown 117.6
2296 Male, age 66, both hemispheres 93.0
2069 Male, age 47, both hemispheres 73.4
1877 Male, age 55, unknown 67.6
2297 Male, age 75, both hemispheres 54.2
2721 Male, age 90, both hemispheres 49.2
Cervical spinal cord, ventral horn
nTPM: 86.9
2068 Male, age 55, unknown 96.4
2098 Female, age 72, unknown 89.2
2809 Male, age 90, both hemispheres 85.7
2480 Male, age 75, both hemispheres 84.7
2295 Male, age 66, both hemispheres 83.5
2820 Female, age 79, both hemispheres 82.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.9
Samples: 204

Max nTPM: 250.3
Min nTPM: 63.9
Std nTPM: 36.6
Median nTPM: 146.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 250.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 246.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 241.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 238.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 237.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 233.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 226.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 225.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 225.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 223.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 221.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 220.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 220.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 219.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 218.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 215.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 214.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 209.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 209.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 206.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 206.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 205.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 202.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 201.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 200.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 197.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 195.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 189.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 189.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 188.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 186.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 186.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 185.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 185.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 184.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 183.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 183.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 181.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 179.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 179.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 178.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 177.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 176.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 176.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 175.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 174.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 174.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 172.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 172.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 172.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 171.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 171.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 168.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 167.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 167.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 167.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 167.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 166.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 166.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 165.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 165.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 164.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 164.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 161.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 161.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 158.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 158.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 158.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 158.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 158.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 158.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 158.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 157.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 157.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 156.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 156.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 156.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 155.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 155.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 155.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 155.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 153.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 153.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 153.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 152.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 152.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 151.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 151.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 151.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 151.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 150.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 150.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 149.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 149.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 149.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 148.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 148.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 148.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 147.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 147.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 146.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 146.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 145.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 145.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 145.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 145.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 144.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 144.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 143.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 143.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 143.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 143.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 142.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 142.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 142.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 141.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 141.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 141.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 140.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 140.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 139.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 139.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 139.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 139.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 139.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 139.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 138.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 138.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 138.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 138.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 138.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 137.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 136.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 134.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 134.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 133.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 133.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 133.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 133.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 131.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 131.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 131.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 129.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 129.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 129.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 128.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 128.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 127.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 127.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 125.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 125.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 125.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 125.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 125.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 124.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 122.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 121.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 121.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 120.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 120.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 118.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 117.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 116.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 116.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 116.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 115.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 115.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 115.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 115.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 115.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 115.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 114.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 114.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 113.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 112.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 110.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 106.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 106.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 106.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 104.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 104.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 104.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 104.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 103.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 99.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 97.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 97.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 91.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 91.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 90.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 89.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 86.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 85.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 84.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 82.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 78.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.1
FF:10181-103D1 60 years, female 41.3
FF:10159-103A6 76 years, female 40.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.8
Samples: 4

Max nTPM: 131.1
Min nTPM: 98.1
Sample A Female 98.1
Sample B Female 107.8
Sample C Male 131.1
Sample D Male 102.0
Ventral spinal cord
nTPM: 137.5
Samples: 4

Max nTPM: 158.3
Min nTPM: 108.0
Sample A Female 108.0
Sample B Female 152.8
Sample C Male 158.3
Sample D Male 130.8

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