MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA Brain:75.7 nTPM
GTEx:46.6 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:82.2 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.6
2586 Male, age 75, left hemisphere 81.4
2666 Male, age 74, left hemisphere 78.4
2828 Female, age 72, unknown 76.1
1827 Male, age 72, unknown 74.7
1833 Male, age 53, unknown 71.1
2219 Male, age 76, both hemispheres 66.2
1830 Male, age 51, unknown 66.0
1870 Female, age 42, unknown 65.1
2411 Female, age 72, unknown 64.8
2019 Male, age 18, unknown 62.4
Dorsal raphe nucleus
nTPM: 67.8
2298 Female, age 72, unknown 70.6
2750 Male, age 76, both hemispheres 68.6
1828 Male, age 53, unknown 68.2
2016 Female, age 72, unknown 67.4
2047 Male, age 72, unknown 64.0
Inferior colliculus
nTPM: 63.3
2849 Male, age 72, unknown 68.2
1890 Male, age 53, unknown 62.8
1848 Female, age 42, unknown 61.1
2097 Female, age 72, unknown 60.9
Median raphe nucleus
nTPM: 75.7
2220 Male, age 76, midline 75.7
Periaquaductal grey, anterior
nTPM: 69.7
1795 Male, age 51, unknown 71.8
2502 Female, age 75, unknown 69.9
1947 Male, age 18, unknown 67.5
Periaquaductal grey, dorsal
nTPM: 69.7
2850 Male, age 76, both hemispheres 82.7
1831 Male, age 72, unknown 68.8
2464 Female, age 72, unknown 65.4
1840 Male, age 53, unknown 62.0
Periaquaductal grey, lateral
nTPM: 70.1
2140 Male, age 76, both hemispheres 71.9
2272 Male, age 74, both hemispheres 71.9
2053 Male, age 18, unknown 66.5
Pretectal area
nTPM: 72.2
1815 Male, age 53, unknown 84.4
1816 Male, age 51, unknown 83.3
1817 Female, age 42, unknown 81.0
2007 Male, age 72, unknown 73.2
2667 Female, age 75, unknown 73.1
2273 Male, age 74, both hemispheres 69.7
2825 Male, age 18, unknown 69.6
1944 Female, age 72, unknown 68.6
2224 Female, age 72, unknown 68.6
2407 Male, age 75, both hemispheres 61.6
2316 Male, age 76, right hemisphere 61.5
Red nucleus
nTPM: 67.2
2584 Male, age 75, left hemisphere 75.7
1904 Male, age 53, unknown 71.2
2725 Female, age 75, unknown 70.6
2823 Male, age 76, right hemisphere 70.5
2785 Male, age 18, unknown 67.6
1954 Female, age 42, unknown 67.5
1821 Female, age 72, unknown 66.9
1865 Male, age 51, unknown 66.2
2227 Male, age 72, unknown 65.9
2769 Male, age 72, unknown 62.9
2503 Female, age 72, unknown 62.7
2588 Male, age 74, left hemisphere 58.3
Substantia nigra
nTPM: 70.4
2665 Male, age 74, both hemispheres 82.3
1916 Female, age 42, unknown 76.9
2699 Male, age 18, unknown 75.9
1851 Male, age 51, unknown 73.2
2590 Female, age 75, unknown 68.4
1889 Female, age 72, unknown 68.0
1941 Male, age 53, unknown 66.0
2241 Male, age 72, unknown 66.0
2583 Male, age 75, right hemisphere 65.9
2409 Female, age 72, unknown 61.7
Superior colliculus
nTPM: 71.1
2664 Male, age 75, both hemispheres 82.3
2261 Male, age 18, unknown 82.0
1995 Male, age 72, unknown 74.3
1913 Female, age 42, unknown 73.3
2087 Female, age 72, unknown 71.2
1796 Male, age 53, unknown 68.7
2668 Female, age 75, unknown 67.6
2587 Male, age 74, left hemisphere 66.8
1839 Male, age 51, unknown 64.5
1895 Male, age 76, right hemisphere 60.0
Ventral tegmental area
nTPM: 67.4
2218 Male, age 76, both hemispheres 75.5
1915 Female, age 42, unknown 67.8
2223 Female, age 72, unknown 66.1
2410 Female, age 72, unknown 66.0
2021 Male, age 53, unknown 65.3
1942 Male, age 51, unknown 64.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.6
Samples: 183

Max nTPM: 81.1
Min nTPM: 31.7
Std nTPM: 8.7
Median nTPM: 44.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 78.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 77.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 69.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 68.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 65.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 65.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 64.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 63.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.5
FF:10158-103A5 76 years, female 110.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.3
Samples: 4

Max nTPM: 49.1
Min nTPM: 46.2
Sample A Female 47.0
Sample B Female 46.2
Sample C Male 47.0
Sample D Male 49.1
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 65.6
Min nTPM: 36.7
Sample A Female 65.6
Sample B Female 40.9
Sample C Male 46.7
Sample D Male 36.7
Periaqueductal gray
nTPM: 40.9
Samples: 3

Max nTPM: 45.3
Min nTPM: 38.5
Sample B Female 38.5
Sample C Male 45.3
Sample D Male 38.9
Superior colliculi
nTPM: 49.7
Samples: 4

Max nTPM: 59.5
Min nTPM: 41.0
Sample A Female 53.9
Sample B Female 59.5
Sample C Male 41.0
Sample D Male 44.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.2
Samples: 4

Max nTPM: 86.8
Min nTPM: 78.2
Sample A Male 83.4
Sample B Male 78.2
Sample C Female 80.5
Sample D Female 86.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
119687 Antisense, RP_040507_01_C02, Mouse strain C57BL/6J (56 days, male) 2.1
130912 Antisense, RP_040507_01_C02, Mouse strain C57BL/6J (56 days, male) 1.6

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