HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:107.6 nTPM
HPA Brain:93.1 nTPM
GTEx:107.6 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:46.3 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041504
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 93.1
Sample id Sample description nTPM
Hippocampus
nTPM: 85.2
1898 Male, age 80, left hemisphere 107.4
1855 Male, age 76, left hemisphere 91.6
2621 Female, age 67, right hemisphere 80.9
2529 Female, age 94, left hemisphere 79.9
2148 Female, age 91, left hemisphere 78.5
1911 Female, age 85, right hemisphere 72.6
Dentate gyrus
nTPM: 85.3
2530 Female, age 94, left hemisphere 96.4
1927 Female, age 91, both hemispheres 93.4
2010 Male, age 76, both hemispheres 91.5
2528 Male, age 74, both hemispheres 80.1
2246 Female, age 85, both hemispheres 76.7
2531 Female, age 67, both hemispheres 73.9
Entorhinal gyrus
nTPM: 76.9
1787 Male, age 76, left hemisphere 82.2
1938 Female, age 85, left hemisphere 81.0
2117 Female, age 91, right hemisphere 77.7
2613 Female, age 94, left hemisphere 77.0
2764 Male, age 80, right hemisphere 76.2
2686 Male, age 75, right hemisphere 67.4
Hippocampus, CA1
nTPM: 91.2
2749 Male, age 80, left hemisphere 115.7
2045 Male, age 76, both hemispheres 99.3
2527 Male, age 74, both hemispheres 85.1
1873 Female, age 85, both hemispheres 82.3
2082 Female, age 91, right hemisphere 73.4
Hippocampus, CA2
nTPM: 85.4
1963 Male, age 80, left hemisphere 101.4
2249 Male, age 74, both hemispheres 98.6
1892 Male, age 76, both hemispheres 92.4
2437 Female, age 94, left hemisphere 82.0
2113 Female, age 91, right hemisphere 71.1
1940 Female, age 85, left hemisphere 67.2
Hippocampus, CA3
nTPM: 93.1
2436 Male, age 74, both hemispheres 119.3
2137 Male, age 80, left hemisphere 96.8
2620 Female, age 94, left hemisphere 96.7
2861 Female, age 67, both hemispheres 90.6
1867 Male, age 76, both hemispheres 85.6
1891 Female, age 85, both hemispheres 69.3
Parahippocampal cortex
nTPM: 72.4
2250 Female, age 67, right hemisphere 82.7
1933 Female, age 85, both hemispheres 80.0
2245 Female, age 91, both hemispheres 76.0
2622 Female, age 67, right hemisphere 73.4
1850 Male, age 80, both hemispheres 73.1
2018 Male, age 76, both hemispheres 72.3
1990 Female, age 91, right hemisphere 70.3
2693 Female, age 94, both hemispheres 67.5
2532 Female, age 72, left hemisphere 66.8
2692 Male, age 74, both hemispheres 61.5
Perirhinal gyrus
nTPM: 78.0
1847 Female, age 91, left hemisphere 92.7
1794 Male, age 80, right hemisphere 82.8
1841 Female, age 85, right hemisphere 77.4
2521 Female, age 94, right hemisphere 70.0
2848 Male, age 76, right hemisphere 67.3
Subiculum
nTPM: 75.1
2042 Male, age 76, both hemispheres 79.9
2729 Female, age 91, right hemisphere 79.3
1901 Male, age 80, both hemispheres 79.1
1977 Female, age 85, both hemispheres 77.5
2619 Male, age 74, both hemispheres 73.4
2438 Female, age 94, left hemisphere 61.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 107.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 107.6
Samples: 255

Max nTPM: 169.5
Min nTPM: 58.4
Std nTPM: 22.2
Median nTPM: 107.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 169.5
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 166.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 166.3
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 163.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 161.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 161.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 158.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 155.6
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 155.4
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 153.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 153.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.0
FF:10169-103B7 60 years, female 31.1
FF:10153-102I9 76 years, female 22.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 44.0
Pig sample Sample description nTPM
Subiculum
nTPM: 29.7
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.2
Sample A Female 34.7
Sample B Female 27.4
Sample C Male 29.3
Sample D Male 27.2
Dorsal hippocampus
nTPM: 44.0
Samples: 4

Max nTPM: 63.4
Min nTPM: 30.2
Sample A Female 63.4
Sample B Female 38.8
Sample C Male 43.6
Sample D Male 30.2
Entorhinal cortex
nTPM: 29.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 22.3
Sample A Female 29.9
Sample B Female 33.4
Sample C Male 30.9
Sample D Male 22.3
Ventral hippocampus
nTPM: 39.2
Samples: 4

Max nTPM: 46.4
Min nTPM: 26.5
Sample A Female 41.6
Sample B Female 26.5
Sample C Male 42.4
Sample D Male 46.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 46.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.2
Samples: 4

Max nTPM: 45.3
Min nTPM: 43.1
Sample A Male 45.3
Sample B Male 43.1
Sample C Female 45.0
Sample D Female 43.5
Hippocampal formation
nTPM: 46.3
Samples: 4

Max nTPM: 53.1
Min nTPM: 36.9
Sample A Male 44.1
Sample B Male 36.9
Sample C Female 51.2
Sample D Female 53.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
68341466 Antisense, RP_041207_01_F03, Mouse strain C57BL/6J (56 days, male) 1.2

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