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  • PPP2R1A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:247.2 nTPM
HPA Brain:239.9 nTPM
GTEx:247.2 nTPM
FANTOM5:148.1 Scaled Tags Per Million
Pig:168.4 nTPM
Mouse:466.6 nTPM
Allen mouse:19.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.9
Sample id Sample description nTPM
Amygdala
nTPM: 215.3
2814 Male, age 76, right hemisphere 280.7
2517 Female, age 94, left hemisphere 218.9
1987 Female, age 91, left hemisphere 208.9
2514 Male, age 75, right hemisphere 188.7
2695 Female, age 67, right hemisphere 179.2
Basal amygdala
nTPM: 230.9
2685 Female, age 94, left hemisphere 272.5
1955 Male, age 76, both hemispheres 245.4
2110 Male, age 80, left hemisphere 237.3
2243 Female, age 91, right hemisphere 232.0
2609 Male, age 75, right hemisphere 211.5
2827 Female, age 67, right hemisphere 187.1
Central amygdala
nTPM: 239.9
2826 Female, age 94, left hemisphere 292.0
1905 Male, age 76, both hemispheres 291.0
2515 Male, age 75, right hemisphere 217.0
2239 Male, age 80, left hemisphere 214.7
2701 Female, age 91, right hemisphere 185.0
Corticomedial amygdala
nTPM: 220.1
2829 Male, age 80, left hemisphere 266.8
2242 Female, age 91, right hemisphere 239.0
2429 Female, age 94, left hemisphere 222.0
2240 Male, age 76, both hemispheres 206.9
2428 Male, age 75, right hemisphere 205.7
2535 Female, age 67, right hemisphere 180.6
Lateral amygdala
nTPM: 224.5
2534 Female, age 94, left hemisphere 308.1
1883 Male, age 76, both hemispheres 284.7
2255 Female, age 91, right hemisphere 198.2
2256 Male, age 80, left hemisphere 194.9
2516 Male, age 75, right hemisphere 194.3
2830 Female, age 67, right hemisphere 166.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 247.2
Samples: 181

Max nTPM: 495.6
Min nTPM: 122.4
Std nTPM: 72.2
Median nTPM: 235.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 495.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 468.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 461.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 458.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 449.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 427.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 425.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 399.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 394.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 393.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 389.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 374.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 373.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 369.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 367.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 365.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 363.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 358.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 355.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 336.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 335.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 333.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 333.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 332.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 317.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 317.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 313.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 306.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 305.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 299.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 298.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 298.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 293.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 291.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 290.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 288.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 288.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 286.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 286.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 285.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 285.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 284.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 284.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 283.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 283.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 282.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 282.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 279.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 276.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 275.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 275.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 275.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 272.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 268.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 268.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 267.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 267.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 266.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 265.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 265.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 264.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 263.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 262.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 262.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 261.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 260.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 260.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 260.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 259.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 259.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 257.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 255.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 254.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 252.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 249.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 248.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 245.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 245.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 245.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 244.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 243.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 240.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 239.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 239.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 239.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 239.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 237.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 237.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 236.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 235.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 235.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 234.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 234.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 233.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 233.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 233.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 232.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 232.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 231.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 229.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 228.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 227.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 226.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 226.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 224.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 223.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 222.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 221.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 220.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 219.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 219.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 218.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 218.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 217.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 217.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 215.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 213.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 212.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 211.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 210.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 209.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 208.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 207.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 206.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 205.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 204.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 204.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 203.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 202.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 200.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 200.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 198.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 198.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 196.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 196.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 195.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 193.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 193.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 192.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 191.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 191.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 190.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 190.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 188.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 188.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 188.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 188.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 187.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 187.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 185.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 184.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 182.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 180.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 179.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 177.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 177.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 177.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 177.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 176.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 175.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 174.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 173.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 172.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 172.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 171.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 170.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 170.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 169.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 162.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 158.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 155.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 151.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 139.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 135.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 131.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 127.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 125.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 122.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

148.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 148.1
FF:10151-102I7 76 years, female 148.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.4
Pig sample Sample description nTPM
Amygdala
nTPM: 168.4
Samples: 4

Max nTPM: 231.8
Min nTPM: 119.6
Sample A Female 231.8
Sample B Female 119.6
Sample C Male 154.1
Sample D Male 167.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 466.6
Samples: 4

Max nTPM: 504.1
Min nTPM: 447.9
Sample A Male 504.1
Sample B Male 453.7
Sample C Female 447.9
Sample D Female 460.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.0
68667946 Antisense, RP_050203_01_B05, Mouse strain C57BL/6J (56 days, male) 19.0

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