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RPL18A
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPL18A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:734.1 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:82.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055259
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

734.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 734.1
Samples: 300

Max nTPM: 1852.1
Min nTPM: 301.9
Std nTPM: 207.2
Median nTPM: 711.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1852.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1743.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1427.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1301.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1277.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1271.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1271.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1198.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1194.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1192.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1188.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1163.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1150.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1143.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1136.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1106.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1104.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1093.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1075.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1068.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1066.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1066.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1053.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1051.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1036.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1033.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1033.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1026.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1014.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1014.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1005.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 995.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 992.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 990.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 989.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 972.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 957.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 956.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 954.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 948.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 945.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 943.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 942.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 940.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 925.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 913.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 912.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 898.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 895.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 894.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 886.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 885.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 885.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 878.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 870.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 864.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 864.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 861.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 855.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 854.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 852.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 842.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 839.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 839.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 838.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 838.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 835.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 835.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 834.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 833.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 825.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 824.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 823.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 821.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 820.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 819.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 819.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 817.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 816.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 812.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 811.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 809.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 808.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 807.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 806.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 804.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 803.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 801.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 797.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 795.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 794.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 792.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 790.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 789.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 788.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 787.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 784.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 780.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 779.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 779.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 776.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 774.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 772.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 772.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 772.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 771.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 771.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 769.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 768.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 767.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 760.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 760.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 759.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 759.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 756.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 754.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 751.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 750.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 748.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 747.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 746.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 744.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 744.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 743.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 739.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 738.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 738.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 735.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 732.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 731.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 730.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 730.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 729.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 729.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 728.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 727.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 724.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 721.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 720.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 720.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 719.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 717.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 716.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 715.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 713.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 712.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 712.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 712.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 712.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 711.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 710.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 708.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 707.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 706.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 705.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 704.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 704.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 704.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 704.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 702.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 701.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 700.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 700.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 692.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 692.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 691.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 690.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 688.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 687.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 687.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 686.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 685.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 685.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 684.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 683.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 682.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 679.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 679.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 678.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 672.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 668.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 667.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 664.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 661.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 660.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 658.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 658.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 655.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 650.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 650.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 643.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 641.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 637.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 635.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 632.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 629.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 627.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 625.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 625.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 623.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 622.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 622.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 621.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 618.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 613.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 612.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 611.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 611.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 609.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 605.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 603.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 602.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 601.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 595.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 594.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 594.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 591.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 591.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 590.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 590.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 590.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 589.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 587.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 587.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 586.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 586.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 585.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 583.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 582.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 581.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 581.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 581.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 577.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 576.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 575.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 572.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 568.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 567.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 562.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 560.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 558.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 558.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 556.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 555.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 551.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 550.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 549.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 549.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 549.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 549.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 548.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 547.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 544.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 543.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 543.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 543.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 541.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 540.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 538.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 537.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 536.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 536.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 534.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 534.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 533.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 532.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 532.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 530.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 527.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 525.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 525.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 524.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 521.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 519.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 517.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 515.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 512.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 511.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 507.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 505.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 499.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 490.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 487.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 482.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 482.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 480.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 474.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 471.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 468.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 465.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 462.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 452.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 448.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 447.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 420.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 405.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 373.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 335.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 322.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 301.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.0
FF:10164-103B2 76 years, female 6.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.6
Pig sample Sample description nTPM
Caudate
nTPM: 82.7
Samples: 4

Max nTPM: 95.0
Min nTPM: 69.4
Sample A Female 73.5
Sample B Female 92.7
Sample C Male 95.0
Sample D Male 69.4

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