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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:36.4 nTPM
HPA Brain:49.9 nTPM
GTEx:36.4 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:26.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 33.3
1981 Female, age 72, midline 40.3
2194 Female, age 79, both hemispheres 38.9
2816 Male, age 47, midline 29.6
2048 Male, age 55, midline 28.9
2565 Male, age 75, midline 28.9
Cervical spinal cord, dorsal horn
nTPM: 30.3
2173 Female, age 72, unknown 45.8
2069 Male, age 47, both hemispheres 37.0
2296 Male, age 66, both hemispheres 30.1
1877 Male, age 55, unknown 29.3
2297 Male, age 75, both hemispheres 20.4
2721 Male, age 90, both hemispheres 19.2
Cervical spinal cord, ventral horn
nTPM: 49.9
2809 Male, age 90, both hemispheres 63.7
2480 Male, age 75, both hemispheres 54.8
2068 Male, age 55, unknown 52.5
2295 Male, age 66, both hemispheres 45.0
2820 Female, age 79, both hemispheres 43.8
2098 Female, age 72, unknown 39.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 36.4
Samples: 204

Max nTPM: 89.2
Min nTPM: 8.9
Std nTPM: 17.1
Median nTPM: 31.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 89.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 87.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 85.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 84.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 84.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 81.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 75.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 72.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 71.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 71.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 71.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 70.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 69.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 69.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 68.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 68.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 67.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 66.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 65.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 61.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 58.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 58.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 57.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 57.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 57.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 56.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 56.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 56.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 55.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 55.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 54.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 54.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 54.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 53.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 53.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 52.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 52.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 51.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 51.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 51.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 51.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 50.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 50.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 48.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 48.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 47.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 47.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 46.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 44.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 43.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 43.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 43.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 43.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 43.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 43.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 42.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 42.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 41.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 40.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 40.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 40.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 40.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 39.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 39.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 39.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 39.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 39.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 39.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 38.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 38.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 37.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 37.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 37.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 37.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 37.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 37.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 37.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 37.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 37.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 37.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 37.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 36.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 35.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 35.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 35.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 34.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 34.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 34.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 34.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 34.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 33.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 33.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 33.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 33.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 33.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 33.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 32.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 32.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 31.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 31.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 31.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 31.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 31.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 31.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 31.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 31.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 30.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 30.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 30.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 30.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 30.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 30.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 30.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 29.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 29.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 29.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 29.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 29.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 29.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 29.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 29.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 29.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 28.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 28.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 28.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 28.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 27.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 27.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 27.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 26.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 26.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 26.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 26.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 26.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 26.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 25.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 25.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 24.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 24.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 24.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 24.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 24.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 24.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 23.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 23.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 23.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 23.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 23.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 23.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 23.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 23.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 22.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 22.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 22.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 22.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 22.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 22.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 22.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 22.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 22.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 22.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 22.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 22.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 21.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 21.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 21.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 21.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 21.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 21.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 21.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 21.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 20.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 20.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 20.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 20.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 20.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 19.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 19.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 19.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 19.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 19.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 19.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 18.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 17.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 17.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 17.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 17.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 16.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 16.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 16.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 16.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 16.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 15.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 13.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 13.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 13.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 12.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 12.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 12.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 10.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 8.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 48.3
FF:10181-103D1 60 years, female 52.4
FF:10159-103A6 76 years, female 44.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.7
Samples: 4

Max nTPM: 38.4
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 29.9
Sample C Male 38.4
Sample D Male 22.0
Ventral spinal cord
nTPM: 25.1
Samples: 4

Max nTPM: 29.8
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 29.8
Sample C Male 26.2
Sample D Male 25.8

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