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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:699.7 nTPM
HPA Brain:543.1 nTPM
GTEx:699.7 nTPM
FANTOM5:402.5 Scaled Tags Per Million
Pig:579.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

543.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 444.9
1981 Female, age 72, midline 577.9
2816 Male, age 47, midline 517.7
2194 Female, age 79, both hemispheres 486.7
2048 Male, age 55, midline 355.4
2565 Male, age 75, midline 286.9
Cervical spinal cord, dorsal horn
nTPM: 543.1
2296 Male, age 66, both hemispheres 1054.3
2173 Female, age 72, unknown 795.0
2069 Male, age 47, both hemispheres 474.9
1877 Male, age 55, unknown 401.0
2721 Male, age 90, both hemispheres 282.4
2297 Male, age 75, both hemispheres 250.8
Cervical spinal cord, ventral horn
nTPM: 495.9
2068 Male, age 55, unknown 614.7
2820 Female, age 79, both hemispheres 579.2
2098 Female, age 72, unknown 500.9
2480 Male, age 75, both hemispheres 476.2
2809 Male, age 90, both hemispheres 433.5
2295 Male, age 66, both hemispheres 370.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

699.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 699.7
Samples: 204

Max nTPM: 1499.7
Min nTPM: 128.4
Std nTPM: 273.3
Median nTPM: 681.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1499.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1437.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1413.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1383.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1275.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1226.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1205.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1203.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1189.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1183.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1146.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1132.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1125.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1110.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1100.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1088.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1086.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1082.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1060.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1060.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1056.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1053.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1047.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1046.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1027.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1025.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1006.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1001.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 993.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 991.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 986.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 985.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 975.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 965.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 961.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 960.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 940.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 936.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 932.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 929.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 927.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 926.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 926.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 925.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 911.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 909.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 906.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 905.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 903.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 903.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 897.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 896.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 890.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 890.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 888.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 885.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 875.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 872.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 870.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 869.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 868.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 849.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 842.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 842.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 830.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 830.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 826.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 823.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 819.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 817.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 814.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 814.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 811.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 807.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 806.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 793.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 790.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 786.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 783.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 776.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 771.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 768.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 761.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 756.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 755.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 747.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 746.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 745.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 738.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 734.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 731.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 729.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 720.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 717.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 715.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 703.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 699.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 696.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 694.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 686.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 683.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 682.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 680.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 679.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 678.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 674.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 671.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 665.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 665.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 662.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 661.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 655.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 652.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 651.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 647.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 636.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 625.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 624.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 623.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 621.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 613.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 609.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 605.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 596.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 596.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 592.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 586.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 583.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 580.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 580.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 574.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 570.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 570.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 567.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 560.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 556.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 541.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 537.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 536.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 526.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 524.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 521.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 520.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 518.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 518.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 515.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 511.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 510.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 510.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 501.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 500.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 493.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 491.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 490.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 490.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 489.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 488.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 488.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 480.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 478.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 477.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 477.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 471.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 469.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 465.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 464.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 458.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 456.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 443.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 432.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 430.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 427.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 427.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 421.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 421.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 416.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 402.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 381.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 376.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 373.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 371.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 370.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 355.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 350.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 344.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 334.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 332.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 323.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 316.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 315.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 296.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 294.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 274.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 273.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 271.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 270.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 268.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 244.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 216.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 207.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 182.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 133.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 128.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

402.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 402.5
FF:10181-103D1 60 years, female 502.8
FF:10159-103A6 76 years, female 302.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

579.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 465.4
Samples: 4

Max nTPM: 525.3
Min nTPM: 381.6
Sample A Female 525.3
Sample B Female 459.4
Sample C Male 381.6
Sample D Male 495.2
Ventral spinal cord
nTPM: 579.9
Samples: 4

Max nTPM: 670.9
Min nTPM: 511.9
Sample A Female 621.2
Sample B Female 515.7
Sample C Male 511.9
Sample D Male 670.9

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