MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.2 nTPM
HPA Brain:97.9 nTPM
GTEx:86.2 nTPM
FANTOM5:116.7 Scaled Tags Per Million
Pig:102.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.3
2586 Male, age 75, left hemisphere 100.8
1830 Male, age 51, unknown 93.9
2666 Male, age 74, left hemisphere 93.5
2828 Female, age 72, unknown 92.9
1870 Female, age 42, unknown 88.6
2411 Female, age 72, unknown 86.3
1833 Male, age 53, unknown 84.9
1827 Male, age 72, unknown 83.8
2019 Male, age 18, unknown 79.1
2219 Male, age 76, both hemispheres 69.3
Dorsal raphe nucleus
nTPM: 78.0
2750 Male, age 76, both hemispheres 85.3
2047 Male, age 72, unknown 81.1
1828 Male, age 53, unknown 77.1
2016 Female, age 72, unknown 76.8
2298 Female, age 72, unknown 69.7
Inferior colliculus
nTPM: 71.8
2849 Male, age 72, unknown 77.7
1848 Female, age 42, unknown 75.1
1890 Male, age 53, unknown 71.7
2097 Female, age 72, unknown 62.5
Median raphe nucleus
nTPM: 97.9
2220 Male, age 76, midline 97.9
Periaquaductal grey, anterior
nTPM: 81.9
2502 Female, age 75, unknown 84.7
1795 Male, age 51, unknown 80.8
1947 Male, age 18, unknown 80.1
Periaquaductal grey, dorsal
nTPM: 75.4
2464 Female, age 72, unknown 80.5
2850 Male, age 76, both hemispheres 79.6
1831 Male, age 72, unknown 72.7
1840 Male, age 53, unknown 68.7
Periaquaductal grey, lateral
nTPM: 75.5
2140 Male, age 76, both hemispheres 80.5
2053 Male, age 18, unknown 77.9
2272 Male, age 74, both hemispheres 68.0
Pretectal area
nTPM: 78.2
2407 Male, age 75, both hemispheres 90.0
2316 Male, age 76, right hemisphere 84.6
1815 Male, age 53, unknown 84.4
2007 Male, age 72, unknown 78.7
2825 Male, age 18, unknown 78.6
1817 Female, age 42, unknown 77.7
2224 Female, age 72, unknown 75.9
2667 Female, age 75, unknown 75.3
1944 Female, age 72, unknown 74.6
1816 Male, age 51, unknown 74.0
2273 Male, age 74, both hemispheres 66.6
Red nucleus
nTPM: 91.1
2584 Male, age 75, left hemisphere 100.4
2769 Male, age 72, unknown 95.1
2227 Male, age 72, unknown 94.8
1904 Male, age 53, unknown 94.4
1865 Male, age 51, unknown 92.6
2823 Male, age 76, right hemisphere 92.6
2588 Male, age 74, left hemisphere 90.5
2785 Male, age 18, unknown 89.0
2503 Female, age 72, unknown 88.9
1821 Female, age 72, unknown 86.9
1954 Female, age 42, unknown 84.7
2725 Female, age 75, unknown 83.8
Substantia nigra
nTPM: 87.0
2665 Male, age 74, both hemispheres 100.5
2699 Male, age 18, unknown 98.0
1851 Male, age 51, unknown 94.3
2583 Male, age 75, right hemisphere 92.7
1916 Female, age 42, unknown 92.4
2590 Female, age 75, unknown 86.2
1941 Male, age 53, unknown 80.7
1889 Female, age 72, unknown 78.9
2241 Male, age 72, unknown 73.2
2409 Female, age 72, unknown 73.2
Superior colliculus
nTPM: 82.0
1913 Female, age 42, unknown 100.3
2664 Male, age 75, both hemispheres 90.8
2668 Female, age 75, unknown 88.8
1796 Male, age 53, unknown 83.3
1995 Male, age 72, unknown 83.1
2261 Male, age 18, unknown 79.2
2587 Male, age 74, left hemisphere 79.2
1839 Male, age 51, unknown 75.9
2087 Female, age 72, unknown 70.4
1895 Male, age 76, right hemisphere 68.5
Ventral tegmental area
nTPM: 85.2
2223 Female, age 72, unknown 90.8
2021 Male, age 53, unknown 89.6
1915 Female, age 42, unknown 86.0
2410 Female, age 72, unknown 83.6
1942 Male, age 51, unknown 81.4
2218 Male, age 76, both hemispheres 79.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.2
Samples: 183

Max nTPM: 161.4
Min nTPM: 51.2
Std nTPM: 15.6
Median nTPM: 84.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 161.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 159.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 129.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 127.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 124.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 118.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 114.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 113.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 113.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 112.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 112.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.7
FF:10158-103A5 76 years, female 116.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 102.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 102.6
Samples: 4

Max nTPM: 115.9
Min nTPM: 89.4
Sample A Female 115.9
Sample B Female 89.4
Sample C Male 115.5
Sample D Male 89.4
Midbrain
nTPM: 101.6
Samples: 4

Max nTPM: 107.1
Min nTPM: 97.0
Sample A Female 103.5
Sample B Female 97.0
Sample C Male 107.1
Sample D Male 98.8
Periaqueductal gray
nTPM: 88.4
Samples: 3

Max nTPM: 98.5
Min nTPM: 79.7
Sample B Female 87.1
Sample C Male 98.5
Sample D Male 79.7
Superior colliculi
nTPM: 102.0
Samples: 4

Max nTPM: 113.1
Min nTPM: 76.7
Sample A Female 113.1
Sample B Female 76.7
Sample C Male 108.4
Sample D Male 109.6

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