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  • ADAP1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:109.3 nTPM
HPA Brain:90.3 nTPM
GTEx:109.3 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:112.7 nTPM
Mouse:83.0 nTPM
Allen mouse:9.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.3
Sample id Sample description nTPM
Amygdala
nTPM: 69.6
2814 Male, age 76, right hemisphere 97.0
2695 Female, age 67, right hemisphere 73.0
2517 Female, age 94, left hemisphere 66.5
1987 Female, age 91, left hemisphere 58.7
2514 Male, age 75, right hemisphere 52.6
Basal amygdala
nTPM: 90.3
2685 Female, age 94, left hemisphere 108.5
2827 Female, age 67, right hemisphere 98.8
2110 Male, age 80, left hemisphere 98.0
2609 Male, age 75, right hemisphere 82.0
2243 Female, age 91, right hemisphere 81.5
1955 Male, age 76, both hemispheres 72.9
Central amygdala
nTPM: 70.8
2826 Female, age 94, left hemisphere 105.0
2239 Male, age 80, left hemisphere 79.5
1905 Male, age 76, both hemispheres 75.5
2701 Female, age 91, right hemisphere 48.1
2515 Male, age 75, right hemisphere 45.7
Corticomedial amygdala
nTPM: 71.4
2829 Male, age 80, left hemisphere 109.1
2429 Female, age 94, left hemisphere 76.4
2535 Female, age 67, right hemisphere 70.1
2242 Female, age 91, right hemisphere 67.6
2428 Male, age 75, right hemisphere 62.9
2240 Male, age 76, both hemispheres 42.5
Lateral amygdala
nTPM: 87.8
1883 Male, age 76, both hemispheres 111.9
2830 Female, age 67, right hemisphere 107.5
2534 Female, age 94, left hemisphere 106.1
2256 Male, age 80, left hemisphere 84.8
2516 Male, age 75, right hemisphere 58.4
2255 Female, age 91, right hemisphere 58.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 109.3
Samples: 181

Max nTPM: 262.7
Min nTPM: 26.1
Std nTPM: 38.6
Median nTPM: 106.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 262.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 238.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 234.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 209.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 198.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 197.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 192.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 190.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 189.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 176.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 171.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 171.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 170.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 168.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 164.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 162.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 160.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 153.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 150.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 150.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 149.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 148.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 143.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 142.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 142.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 141.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 141.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 141.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 140.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 140.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 140.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 139.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 138.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 136.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 136.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 134.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 134.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 134.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 133.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 133.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 133.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 133.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 131.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 131.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 131.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 129.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 128.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 127.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 127.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 126.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 126.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 125.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 124.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 123.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 121.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 120.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 120.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 118.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 118.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 118.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 117.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 117.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 117.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 117.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 116.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 116.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 116.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 116.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 115.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 114.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 113.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 113.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 112.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 111.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 111.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 111.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 110.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 109.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 108.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 108.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 108.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 108.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 107.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 106.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 106.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 105.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 104.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 103.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 101.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 101.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 100.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 99.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 96.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 96.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 95.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 95.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 95.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 95.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 94.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 94.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 93.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 92.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 92.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 90.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 90.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 90.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 89.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 89.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 89.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 88.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 87.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 86.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 86.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 86.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 86.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 86.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 85.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 85.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 83.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 82.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 81.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 81.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 80.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 78.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 78.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 78.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 77.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 75.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 75.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 75.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 74.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 72.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 70.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 70.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 70.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 66.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 66.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 66.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 64.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 63.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 62.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 61.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 61.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 58.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 56.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 54.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 54.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 51.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 47.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 40.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 26.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 57.8
FF:10151-102I7 76 years, female 57.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.7
Pig sample Sample description nTPM
Amygdala
nTPM: 112.8
Samples: 4

Max nTPM: 146.7
Min nTPM: 91.0
Sample A Female 146.7
Sample B Female 91.0
Sample C Male 118.0
Sample D Male 95.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 83.1
Samples: 4

Max nTPM: 95.9
Min nTPM: 72.0
Sample A Male 72.0
Sample B Male 85.2
Sample C Female 95.9
Sample D Female 79.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.1
74658055 Antisense, RP_060220_04_C10, Mouse strain C57BL/6J (56 days, male) 10.8
69548819 Antisense, RP_050426_02_D04, Mouse strain C57BL/6J (56 days, male) 7.4

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