MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.6 nTPM
HPA Brain:114.2 nTPM
GTEx:97.6 nTPM
FANTOM5:103.3 Scaled Tags Per Million
Pig:98.5 nTPM
Mouse:160.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 114.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.3
1870 Female, age 42, unknown 105.8
2411 Female, age 72, unknown 98.8
2219 Male, age 76, both hemispheres 98.0
1833 Male, age 53, unknown 95.3
2019 Male, age 18, unknown 95.1
1830 Male, age 51, unknown 91.1
1827 Male, age 72, unknown 89.9
2666 Male, age 74, left hemisphere 89.4
2586 Male, age 75, left hemisphere 81.5
2828 Female, age 72, unknown 77.7
Dorsal raphe nucleus
nTPM: 96.8
2298 Female, age 72, unknown 103.9
2750 Male, age 76, both hemispheres 99.3
2047 Male, age 72, unknown 95.1
1828 Male, age 53, unknown 93.6
2016 Female, age 72, unknown 92.1
Inferior colliculus
nTPM: 88.9
2097 Female, age 72, unknown 102.7
1890 Male, age 53, unknown 85.7
1848 Female, age 42, unknown 85.6
2849 Male, age 72, unknown 81.7
Median raphe nucleus
nTPM: 114.2
2220 Male, age 76, midline 114.2
Periaquaductal grey, anterior
nTPM: 93.8
1947 Male, age 18, unknown 109.1
2502 Female, age 75, unknown 86.5
1795 Male, age 51, unknown 85.6
Periaquaductal grey, dorsal
nTPM: 83.6
2850 Male, age 76, both hemispheres 93.3
1831 Male, age 72, unknown 83.6
1840 Male, age 53, unknown 80.9
2464 Female, age 72, unknown 76.6
Periaquaductal grey, lateral
nTPM: 83.8
2272 Male, age 74, both hemispheres 93.9
2053 Male, age 18, unknown 80.1
2140 Male, age 76, both hemispheres 77.5
Pretectal area
nTPM: 95.5
2667 Female, age 75, unknown 106.6
2007 Male, age 72, unknown 105.3
1817 Female, age 42, unknown 104.4
1815 Male, age 53, unknown 100.1
1944 Female, age 72, unknown 99.2
1816 Male, age 51, unknown 97.6
2224 Female, age 72, unknown 95.8
2273 Male, age 74, both hemispheres 90.6
2825 Male, age 18, unknown 88.5
2407 Male, age 75, both hemispheres 86.7
2316 Male, age 76, right hemisphere 76.3
Red nucleus
nTPM: 96.5
1821 Female, age 72, unknown 118.3
2725 Female, age 75, unknown 103.6
1865 Male, age 51, unknown 101.8
1954 Female, age 42, unknown 101.5
1904 Male, age 53, unknown 100.6
2503 Female, age 72, unknown 95.7
2785 Male, age 18, unknown 94.3
2227 Male, age 72, unknown 91.6
2588 Male, age 74, left hemisphere 91.1
2769 Male, age 72, unknown 89.3
2584 Male, age 75, left hemisphere 88.3
2823 Male, age 76, right hemisphere 81.5
Substantia nigra
nTPM: 102.8
2241 Male, age 72, unknown 128.2
1941 Male, age 53, unknown 114.9
1916 Female, age 42, unknown 113.7
1851 Male, age 51, unknown 104.0
2409 Female, age 72, unknown 103.9
1889 Female, age 72, unknown 101.2
2583 Male, age 75, right hemisphere 91.2
2699 Male, age 18, unknown 90.9
2665 Male, age 74, both hemispheres 90.5
2590 Female, age 75, unknown 89.4
Superior colliculus
nTPM: 87.8
2587 Male, age 74, left hemisphere 97.8
1839 Male, age 51, unknown 93.8
2261 Male, age 18, unknown 92.6
2087 Female, age 72, unknown 90.4
2668 Female, age 75, unknown 89.1
1913 Female, age 42, unknown 86.3
1796 Male, age 53, unknown 86.2
1895 Male, age 76, right hemisphere 82.2
1995 Male, age 72, unknown 79.8
2664 Male, age 75, both hemispheres 79.5
Ventral tegmental area
nTPM: 98.4
2223 Female, age 72, unknown 110.7
2410 Female, age 72, unknown 103.4
1915 Female, age 42, unknown 102.8
2218 Male, age 76, both hemispheres 97.3
1942 Male, age 51, unknown 90.6
2021 Male, age 53, unknown 85.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.6
Samples: 183

Max nTPM: 279.8
Min nTPM: 56.3
Std nTPM: 26.8
Median nTPM: 92.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 279.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 223.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 168.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 164.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 163.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 157.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 150.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 146.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 144.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 144.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 144.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.3
FF:10158-103A5 76 years, female 103.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 98.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 110.4
Min nTPM: 74.1
Sample A Female 110.4
Sample B Female 79.6
Sample C Male 98.7
Sample D Male 74.1
Midbrain
nTPM: 98.5
Samples: 4

Max nTPM: 103.0
Min nTPM: 88.2
Sample A Female 103.0
Sample B Female 88.2
Sample C Male 99.9
Sample D Male 102.9
Periaqueductal gray
nTPM: 82.4
Samples: 3

Max nTPM: 90.5
Min nTPM: 77.0
Sample B Female 79.7
Sample C Male 90.5
Sample D Male 77.0
Superior colliculi
nTPM: 98.2
Samples: 4

Max nTPM: 109.4
Min nTPM: 82.5
Sample A Female 109.4
Sample B Female 82.5
Sample C Male 103.5
Sample D Male 97.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 160.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.4
Samples: 4

Max nTPM: 164.1
Min nTPM: 157.5
Sample A Male 157.5
Sample B Male 161.0
Sample C Female 164.1
Sample D Female 158.9

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