We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TAX1BP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TAX1BP1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:51.6 nTPM
HPA Brain:91.5 nTPM
GTEx:51.6 nTPM
FANTOM5:121.9 Scaled Tags Per Million
Pig:155.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 88.0
1981 Female, age 72, midline 99.9
2048 Male, age 55, midline 92.3
2194 Female, age 79, both hemispheres 89.4
2565 Male, age 75, midline 79.5
2816 Male, age 47, midline 79.1
Cervical spinal cord, dorsal horn
nTPM: 90.5
2173 Female, age 72, unknown 112.1
2296 Male, age 66, both hemispheres 105.0
2069 Male, age 47, both hemispheres 93.0
2297 Male, age 75, both hemispheres 83.0
1877 Male, age 55, unknown 78.3
2721 Male, age 90, both hemispheres 71.8
Cervical spinal cord, ventral horn
nTPM: 91.5
2098 Female, age 72, unknown 105.5
2809 Male, age 90, both hemispheres 94.0
2068 Male, age 55, unknown 91.4
2480 Male, age 75, both hemispheres 90.6
2295 Male, age 66, both hemispheres 89.3
2820 Female, age 79, both hemispheres 78.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 51.6
Samples: 204

Max nTPM: 77.0
Min nTPM: 33.4
Std nTPM: 6.9
Median nTPM: 51.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 77.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 70.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 67.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 67.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 67.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 66.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 65.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 64.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 63.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 63.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 63.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 63.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 62.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 62.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 62.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 62.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 61.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 61.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 61.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 61.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 60.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 60.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 59.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 59.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 59.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 59.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 59.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 58.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 58.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 58.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 58.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 57.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 57.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 57.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 57.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 57.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 57.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 56.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 56.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 56.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 56.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 56.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 55.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 55.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 55.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 55.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 55.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 55.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 55.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 55.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 55.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 54.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 54.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 54.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 54.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 54.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 54.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 54.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 54.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 54.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 54.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 54.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 54.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 54.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 53.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 53.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 53.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 53.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 53.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 53.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 53.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 53.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 53.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 53.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 53.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 53.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 52.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 52.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 52.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 52.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 52.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 52.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 52.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 52.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 52.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 52.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 52.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 52.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 52.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 52.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 52.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 51.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 51.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 51.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 51.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 51.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 51.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 51.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 51.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 51.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 51.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 50.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 50.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 50.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 50.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 50.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 50.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 50.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 50.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 50.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 50.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 50.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 50.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 50.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 50.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 49.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 49.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 49.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 49.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 49.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 49.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 49.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 48.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 48.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 48.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 48.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 48.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 48.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 48.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 48.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 48.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 48.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 48.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 48.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 48.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 48.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 48.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 48.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 48.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 47.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 47.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 47.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 47.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 47.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 47.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 46.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 46.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 46.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 46.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 46.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 46.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 46.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 46.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 46.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 45.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 45.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 45.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 45.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 45.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 44.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 44.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 44.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 44.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 44.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 44.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 44.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 43.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 43.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 43.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 43.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 43.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 43.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 43.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 42.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 42.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 42.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 42.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 42.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 42.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 41.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 41.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 41.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 41.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 40.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 40.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 39.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 39.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 38.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 38.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 38.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 35.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 34.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 33.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

121.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 121.9
FF:10159-103A6 76 years, female 140.0
FF:10181-103D1 60 years, female 103.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 140.3
Samples: 4

Max nTPM: 172.9
Min nTPM: 117.0
Sample A Female 117.0
Sample B Female 172.9
Sample C Male 150.7
Sample D Male 120.7
Ventral spinal cord
nTPM: 155.2
Samples: 4

Max nTPM: 165.8
Min nTPM: 143.2
Sample A Female 143.2
Sample B Female 158.5
Sample C Male 153.2
Sample D Male 165.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo