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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:149.1 nTPM
HPA Brain:66.8 nTPM
GTEx:149.1 nTPM
FANTOM5:69.7 Scaled Tags Per Million
Pig:27.3 nTPM
Mouse:76.2 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
Sample id Sample description nTPM
Amygdala
nTPM: 66.8
2814 Male, age 76, right hemisphere 76.5
2695 Female, age 67, right hemisphere 69.3
2514 Male, age 75, right hemisphere 66.3
1987 Female, age 91, left hemisphere 61.7
2517 Female, age 94, left hemisphere 60.5
Basal amygdala
nTPM: 62.2
2609 Male, age 75, right hemisphere 78.4
2243 Female, age 91, right hemisphere 65.1
2110 Male, age 80, left hemisphere 63.2
1955 Male, age 76, both hemispheres 58.7
2685 Female, age 94, left hemisphere 57.7
2827 Female, age 67, right hemisphere 50.4
Central amygdala
nTPM: 61.4
2826 Female, age 94, left hemisphere 75.8
2515 Male, age 75, right hemisphere 67.5
1905 Male, age 76, both hemispheres 61.9
2239 Male, age 80, left hemisphere 55.7
2701 Female, age 91, right hemisphere 46.1
Corticomedial amygdala
nTPM: 59.7
2428 Male, age 75, right hemisphere 76.1
2829 Male, age 80, left hemisphere 71.1
2242 Female, age 91, right hemisphere 60.4
2429 Female, age 94, left hemisphere 53.9
2240 Male, age 76, both hemispheres 53.0
2535 Female, age 67, right hemisphere 44.0
Lateral amygdala
nTPM: 60.4
2516 Male, age 75, right hemisphere 70.3
1883 Male, age 76, both hemispheres 67.2
2534 Female, age 94, left hemisphere 65.6
2256 Male, age 80, left hemisphere 56.0
2255 Female, age 91, right hemisphere 53.1
2830 Female, age 67, right hemisphere 50.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 149.1
Samples: 181

Max nTPM: 400.3
Min nTPM: 76.5
Std nTPM: 47.8
Median nTPM: 139.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 400.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 382.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 331.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 324.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 320.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 276.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 273.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 236.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 224.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 221.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 215.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 207.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 206.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 202.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 202.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 194.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 193.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 192.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 192.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 192.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 191.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 189.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 187.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 187.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 184.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 184.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 182.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 182.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 181.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 181.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 180.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 179.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 179.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 178.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 178.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 177.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 175.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 174.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 174.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 173.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 167.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 165.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 165.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 162.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 162.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 161.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 159.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 159.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 158.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 157.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 156.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 156.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 156.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 156.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 155.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 155.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 154.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 153.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 153.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 153.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 153.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 153.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 152.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 152.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 152.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 152.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 151.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 151.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 150.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 150.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 149.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 149.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 148.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 147.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 147.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 146.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 146.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 146.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 145.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 145.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 142.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 142.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 141.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 141.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 140.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 139.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 138.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 137.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 137.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 137.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 136.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 136.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 136.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 136.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 135.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 135.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 135.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 135.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 134.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 133.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 133.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 132.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 132.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 131.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 131.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 131.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 130.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 129.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 129.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 129.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 128.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 128.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 128.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 128.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 127.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 125.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 124.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 123.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 122.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 122.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 121.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 120.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 119.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 119.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 119.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 119.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 118.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 118.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 118.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 116.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 116.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 115.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 115.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 115.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 114.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 113.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 113.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 112.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 111.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 109.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 108.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 108.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 107.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 107.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 106.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 105.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 105.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 101.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 100.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 99.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 95.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 95.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 89.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 84.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 76.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.7
FF:10151-102I7 76 years, female 69.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.3
Pig sample Sample description nTPM
Amygdala
nTPM: 27.3
Samples: 4

Max nTPM: 39.1
Min nTPM: 19.2
Sample A Female 39.1
Sample B Female 26.4
Sample C Male 24.5
Sample D Male 19.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 76.2
Samples: 4

Max nTPM: 80.3
Min nTPM: 71.3
Sample A Male 71.3
Sample B Male 76.9
Sample C Female 80.3
Sample D Female 76.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
69134256 Antisense, RP_050321_02_F03, Mouse strain C57BL/6J (56 days, male) 3.4

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