MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.9 nTPM
HPA Brain:109.1 nTPM
GTEx:49.9 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:83.8 nTPM
Mouse:46.5 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.6
2666 Male, age 74, left hemisphere 183.2
2019 Male, age 18, unknown 119.2
2586 Male, age 75, left hemisphere 118.5
2219 Male, age 76, both hemispheres 101.1
1827 Male, age 72, unknown 93.4
2828 Female, age 72, unknown 90.5
1833 Male, age 53, unknown 77.1
2411 Female, age 72, unknown 73.3
1830 Male, age 51, unknown 71.0
1870 Female, age 42, unknown 68.6
Dorsal raphe nucleus
nTPM: 87.5
1828 Male, age 53, unknown 104.0
2047 Male, age 72, unknown 103.3
2298 Female, age 72, unknown 83.8
2750 Male, age 76, both hemispheres 80.7
2016 Female, age 72, unknown 65.6
Inferior colliculus
nTPM: 76.6
1848 Female, age 42, unknown 91.1
2849 Male, age 72, unknown 80.2
1890 Male, age 53, unknown 69.7
2097 Female, age 72, unknown 65.3
Median raphe nucleus
nTPM: 93.9
2220 Male, age 76, midline 93.9
Periaquaductal grey, anterior
nTPM: 90.6
1947 Male, age 18, unknown 101.2
1795 Male, age 51, unknown 96.1
2502 Female, age 75, unknown 74.5
Periaquaductal grey, dorsal
nTPM: 61.6
1840 Male, age 53, unknown 67.9
2464 Female, age 72, unknown 64.3
2850 Male, age 76, both hemispheres 61.0
1831 Male, age 72, unknown 53.3
Periaquaductal grey, lateral
nTPM: 51.3
2140 Male, age 76, both hemispheres 55.1
2053 Male, age 18, unknown 49.8
2272 Male, age 74, both hemispheres 49.0
Pretectal area
nTPM: 89.4
2007 Male, age 72, unknown 156.0
1817 Female, age 42, unknown 140.7
1944 Female, age 72, unknown 119.4
1816 Male, age 51, unknown 118.8
1815 Male, age 53, unknown 96.8
2667 Female, age 75, unknown 70.1
2224 Female, age 72, unknown 66.2
2825 Male, age 18, unknown 64.5
2407 Male, age 75, both hemispheres 60.4
2316 Male, age 76, right hemisphere 51.1
2273 Male, age 74, both hemispheres 39.7
Red nucleus
nTPM: 71.5
2785 Male, age 18, unknown 109.2
2584 Male, age 75, left hemisphere 96.1
1821 Female, age 72, unknown 74.3
2769 Male, age 72, unknown 73.7
2227 Male, age 72, unknown 72.0
2588 Male, age 74, left hemisphere 71.4
1954 Female, age 42, unknown 71.0
2823 Male, age 76, right hemisphere 63.4
2503 Female, age 72, unknown 61.5
1865 Male, age 51, unknown 57.6
1904 Male, age 53, unknown 54.4
2725 Female, age 75, unknown 53.2
Substantia nigra
nTPM: 109.1
2665 Male, age 74, both hemispheres 158.3
1916 Female, age 42, unknown 140.8
1941 Male, age 53, unknown 139.7
1889 Female, age 72, unknown 124.5
1851 Male, age 51, unknown 106.5
2583 Male, age 75, right hemisphere 103.0
2241 Male, age 72, unknown 85.0
2590 Female, age 75, unknown 83.6
2409 Female, age 72, unknown 78.6
2699 Male, age 18, unknown 71.4
Superior colliculus
nTPM: 84.7
2668 Female, age 75, unknown 181.9
2087 Female, age 72, unknown 100.9
1895 Male, age 76, right hemisphere 90.6
2664 Male, age 75, both hemispheres 89.1
1839 Male, age 51, unknown 84.9
1796 Male, age 53, unknown 80.1
2261 Male, age 18, unknown 68.4
2587 Male, age 74, left hemisphere 61.5
1913 Female, age 42, unknown 46.2
1995 Male, age 72, unknown 43.3
Ventral tegmental area
nTPM: 82.4
1915 Female, age 42, unknown 102.0
2410 Female, age 72, unknown 100.6
2218 Male, age 76, both hemispheres 91.1
1942 Male, age 51, unknown 77.0
2021 Male, age 53, unknown 65.1
2223 Female, age 72, unknown 58.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.9
Samples: 183

Max nTPM: 236.4
Min nTPM: 5.9
Std nTPM: 34.8
Median nTPM: 40.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 236.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 158.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 139.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 130.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 126.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 114.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 113.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 111.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 108.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 104.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 101.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.1
Samples: 4

Max nTPM: 72.9
Min nTPM: 38.8
Sample A Female 69.6
Sample B Female 38.8
Sample C Male 72.9
Sample D Male 39.2
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 84.0
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 50.2
Sample C Male 80.5
Sample D Male 84.0
Periaqueductal gray
nTPM: 53.1
Samples: 3

Max nTPM: 64.1
Min nTPM: 42.3
Sample B Female 53.0
Sample C Male 64.1
Sample D Male 42.3
Superior colliculi
nTPM: 83.8
Samples: 4

Max nTPM: 120.9
Min nTPM: 41.9
Sample A Female 86.1
Sample B Female 41.9
Sample C Male 120.9
Sample D Male 86.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.5
Samples: 4

Max nTPM: 49.0
Min nTPM: 43.4
Sample A Male 49.0
Sample B Male 47.1
Sample C Female 43.4
Sample D Female 46.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
79908802 Antisense, RP_071218_03_D10, Mouse strain C57BL/6J (56 days, male) 4.4
640 Antisense, RP_Baylor_102890, Mouse strain C57BL/6J (56 days, male) 1.4

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