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SLC1A1
HPA
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Brain region
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Brain region
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ipTM
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC1A1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
TRANSPORT REACTIONS
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC1A1
Synonyms EAAC1, EAAT3, hEAAC1
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 1 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
Human disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Secretory epithelial cells - Mixed function (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Alveolar cells type 1, Endometrial glandular cells, Enterocytes, Epicardial cells, Hepatocytes, Oligodendrocyte progenitor cells, Pituicytes/FSCs, Proximal tubule cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Kidney & Intestine - Metabolism (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (Epididymis, Intestine, Kidney)
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Not available
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband p24.2
Chromosome location (bp) 4490468 - 4587469
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000106688 (version 109)
Entrez gene 6505
HGNC HGNC:10939
UniProt P43005
GeneCards SLC1A1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Kidney & Intestine - Metabolism

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 10
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AGPAT2102029
DHRS7B103124
EXTL3115033
FAM210A11108
NUMBL841852
SLC1A323726
SLC1A420222
TM9SF4324229
TMEM951110081
TMEM9B417053
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 8 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ERGIC371871100
FAM209A0200000
LDLRAD12332048
PAGE1112100
RNF5144434010
SLC35A1027000
SYNPR18100
TMEM179B145111
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 20
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AGPAT2102029
ARL6IP585131725
CC2D1A11800
COX15012700
CPT1A001200
DHRS7B103124
EXTL3115033
FAM210A11108
FNDC3B01500
NUMB11104160
NUMBL841852
PTPMT1025600
SLC1A323726
SLC1A420222
SPAG9341320
TM9SF4324229
TMEM20900700
TMEM951110081
TMEM9B417053
YIF1B23600
Show allShow less
SLC1A1 has no defined protein interactions in OpenCell.
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 76
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACSL3031504
AGPAT2102029
ARL8A4641510
ASPH41131049
C5orf1500003
CHCHD6336018
CMTM62174034
COQ8B003029
DAD15681919
DHCR24318832
DHRS7B103124
DPY19L1000114
ECPAS78391324
ELOVL100186
EXTL3115033
FAM210A11108
GPAT4112229
GPX821365433
GZMH000053
HIP1R2012217
IFITM362254034
INPPL154193112
JAK14926027
KDELR1033022
KDELR3101017
KLRB1000035
LAGE372011025
LGALS97024033
LPGAT1001116
NTSR1010021
NUMBL841852
P2RY80000105
PEX3328221
PGAP4004018
POLD3349118
POMGNT1275025
PPOX001026
PTDSS2121841
PXMP223201
RAB29242534
RARS2001019
RELL2117109
S1PR4010086
SFXN2153030
SFXN31164028
SLC1A323726
SLC1A420222
SLC20A1005026
SLC25A19000028
SLC25A2200908
SLC25A33000011
SLC25A42312040
SLC25A40010024
SLC31A201108
SORT172013216
SPG70180023
STARD3153121
STX177813018
TIMMDC165311041
TM9SF1002020
TM9SF4324229
TMBIM62564012
TMEM126A001026
TMEM16500243
TMEM70022012
TMEM72090023
TMEM951110081
TMEM9B417053
TOMM223531121
TUBA1A129900121
UPK20200051
VKORC1L11152027
VMP126618
VSIG4031082
YIPF311311037
YIPF6472509
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene SLC1A1 is associated with 5 reactions in 1 different subsystems, and present in the compartments: Cytosol, Extracellular. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Transport reactions Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria 563 1599 5
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC1A1-201 P43005
Metabolic proteins
Transporters
Predicted membrane proteins
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
524 aa
57.1 kDa
No >9
SLC1A1-202 H0Y7R2
Metabolic proteins
Predicted membrane proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
242 aa
26.6 kDa
No 3

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by the Knut & Alice Wallenberg Foundation.

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