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  • EDF1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:390.4 nTPM
HPA Brain:169.8 nTPM
GTEx:390.4 nTPM
FANTOM5:490.8 Scaled Tags Per Million
Pig:136.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 167.4
1981 Female, age 72, midline 195.0
2194 Female, age 79, both hemispheres 168.9
2565 Male, age 75, midline 167.9
2816 Male, age 47, midline 164.9
2048 Male, age 55, midline 140.0
Cervical spinal cord, dorsal horn
nTPM: 169.8
2173 Female, age 72, unknown 197.2
2721 Male, age 90, both hemispheres 180.2
2296 Male, age 66, both hemispheres 173.3
2069 Male, age 47, both hemispheres 161.5
1877 Male, age 55, unknown 159.1
2297 Male, age 75, both hemispheres 147.1
Cervical spinal cord, ventral horn
nTPM: 168.4
2098 Female, age 72, unknown 186.4
2068 Male, age 55, unknown 170.8
2480 Male, age 75, both hemispheres 166.5
2809 Male, age 90, both hemispheres 164.2
2295 Male, age 66, both hemispheres 163.8
2820 Female, age 79, both hemispheres 158.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

390.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 390.4
Samples: 204

Max nTPM: 689.1
Min nTPM: 218.8
Std nTPM: 84.3
Median nTPM: 384.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 689.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 674.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 638.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 615.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 614.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 600.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 592.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 581.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 574.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 565.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 561.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 557.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 546.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 536.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 531.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 530.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 527.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 523.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 517.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 508.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 505.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 499.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 496.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 484.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 479.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 472.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 472.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 470.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 467.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 466.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 465.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 462.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 459.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 456.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 450.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 447.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 446.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 446.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 444.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 443.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 441.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 440.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 440.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 438.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 437.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 437.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 436.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 436.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 435.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 435.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 435.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 431.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 429.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 426.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 425.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 425.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 424.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 424.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 423.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 422.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 421.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 421.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 420.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 418.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 413.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 409.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 409.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 408.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 407.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 407.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 406.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 406.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 405.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 404.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 404.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 404.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 403.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 403.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 402.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 402.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 402.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 401.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 401.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 399.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 398.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 398.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 397.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 397.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 397.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 397.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 396.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 396.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 394.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 394.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 392.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 392.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 390.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 390.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 388.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 385.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 385.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 384.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 383.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 383.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 381.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 378.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 375.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 373.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 371.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 370.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 368.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 368.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 368.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 368.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 368.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 368.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 367.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 367.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 365.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 364.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 364.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 360.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 359.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 359.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 359.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 357.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 356.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 354.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 352.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 352.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 352.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 350.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 350.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 349.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 348.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 346.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 346.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 346.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 346.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 345.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 345.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 344.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 341.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 341.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 340.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 338.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 338.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 338.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 336.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 336.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 334.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 334.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 333.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 332.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 331.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 326.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 325.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 324.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 324.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 324.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 324.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 323.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 323.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 323.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 321.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 321.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 320.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 320.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 320.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 316.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 316.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 315.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 315.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 315.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 312.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 312.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 311.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 307.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 306.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 303.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 302.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 296.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 296.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 293.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 293.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 291.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 289.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 288.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 288.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 287.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 285.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 281.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 277.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 277.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 267.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 261.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 259.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 259.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 250.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 249.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 240.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 238.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 235.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 218.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

490.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 490.8
FF:10181-103D1 60 years, female 710.4
FF:10159-103A6 76 years, female 271.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 104.7
Samples: 4

Max nTPM: 120.7
Min nTPM: 92.8
Sample A Female 101.8
Sample B Female 92.8
Sample C Male 120.7
Sample D Male 103.3
Ventral spinal cord
nTPM: 136.4
Samples: 4

Max nTPM: 151.2
Min nTPM: 127.8
Sample A Female 134.3
Sample B Female 127.8
Sample C Male 151.2
Sample D Male 132.1

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