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  • SUMMARY

  • TISSUE

  • BRAIN

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  • PTGDS
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3337.6 nTPM
HPA Brain:2189.2 nTPM
GTEx:3337.6 nTPM
FANTOM5:6602.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2189.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2189.2
1981 Female, age 72, midline 2665.7
2194 Female, age 79, both hemispheres 2189.8
2816 Male, age 47, midline 2154.1
2048 Male, age 55, midline 2146.8
2565 Male, age 75, midline 1789.5
Cervical spinal cord, dorsal horn
nTPM: 2094.6
2296 Male, age 66, both hemispheres 2957.2
2173 Female, age 72, unknown 2667.7
2069 Male, age 47, both hemispheres 2104.5
1877 Male, age 55, unknown 1909.7
2721 Male, age 90, both hemispheres 1685.8
2297 Male, age 75, both hemispheres 1242.7
Cervical spinal cord, ventral horn
nTPM: 2156.1
2098 Female, age 72, unknown 3394.9
2068 Male, age 55, unknown 2279.0
2295 Male, age 66, both hemispheres 2126.6
2820 Female, age 79, both hemispheres 1878.9
2809 Male, age 90, both hemispheres 1788.6
2480 Male, age 75, both hemispheres 1468.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3337.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 3337.6
Samples: 204

Max nTPM: 15671.0
Min nTPM: 871.0
Std nTPM: 1341.2
Median nTPM: 3197.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 15671.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 9251.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 6342.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 5675.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5616.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 5581.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5263.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 5110.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 5076.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5057.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 4793.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 4757.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4754.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 4749.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 4721.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 4721.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 4612.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 4563.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 4558.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 4548.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 4543.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 4511.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 4461.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 4384.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4371.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 4356.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 4346.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4342.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 4302.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4261.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 4251.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 4250.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4242.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 4236.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4212.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4207.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 4157.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 4150.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4133.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4115.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4103.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 4099.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4085.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 4084.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4007.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 3979.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3975.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3938.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 3924.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 3919.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 3905.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3878.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 3873.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 3861.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3851.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 3784.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3781.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 3774.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 3770.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3759.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3758.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3715.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3699.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3698.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3695.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3691.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 3689.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3676.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3640.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 3640.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3627.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 3602.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3588.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 3579.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 3556.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3556.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 3544.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 3533.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3532.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3500.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3484.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 3470.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 3458.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3456.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3451.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 3450.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 3443.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3436.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3417.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3409.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3399.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3374.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 3343.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3339.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 3315.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3293.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3276.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3254.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3243.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3214.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 3212.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 3209.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 3185.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3172.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3168.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 3168.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3161.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3156.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3140.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3131.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3094.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3071.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3054.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3051.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3044.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 3034.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3015.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3001.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2991.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2980.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 2977.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2977.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2971.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2962.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2955.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2943.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2930.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 2876.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2862.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2862.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2856.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2834.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2824.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2818.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2811.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2809.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 2786.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2785.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 2780.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2769.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2754.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2737.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2712.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2679.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 2666.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 2663.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2658.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2641.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2639.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 2604.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2578.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2575.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2557.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2555.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2550.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2547.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2531.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 2505.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2501.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2498.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2498.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2494.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2492.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 2469.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2468.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2443.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2413.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2376.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2375.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2355.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2310.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2300.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2300.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2281.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2270.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 2270.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2241.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2231.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2230.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2208.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2150.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2132.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 2080.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2068.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2068.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1991.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1978.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1902.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1891.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1844.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1840.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1839.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1838.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1826.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1795.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1781.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1690.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1593.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1557.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1534.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1459.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1441.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1378.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 871.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6602.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 6602.9
FF:10181-103D1 60 years, female 8874.1
FF:10159-103A6 76 years, female 4331.6

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