MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.6 nTPM
HPA Brain:67.1 nTPM
GTEx:54.6 nTPM
FANTOM5:230.9 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:15.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
2019 Male, age 18, unknown 82.1
2828 Female, age 72, unknown 67.1
2586 Male, age 75, left hemisphere 64.1
1833 Male, age 53, unknown 63.4
2411 Female, age 72, unknown 60.7
1827 Male, age 72, unknown 59.7
1830 Male, age 51, unknown 58.6
1870 Female, age 42, unknown 54.6
2666 Male, age 74, left hemisphere 49.9
2219 Male, age 76, both hemispheres 38.7
Dorsal raphe nucleus
nTPM: 55.3
2047 Male, age 72, unknown 60.5
2016 Female, age 72, unknown 59.7
1828 Male, age 53, unknown 59.4
2750 Male, age 76, both hemispheres 56.9
2298 Female, age 72, unknown 40.3
Inferior colliculus
nTPM: 54.1
1890 Male, age 53, unknown 59.7
1848 Female, age 42, unknown 56.4
2849 Male, age 72, unknown 55.4
2097 Female, age 72, unknown 45.1
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 64.2
2502 Female, age 75, unknown 75.9
1947 Male, age 18, unknown 61.7
1795 Male, age 51, unknown 55.1
Periaquaductal grey, dorsal
nTPM: 58.9
2464 Female, age 72, unknown 64.2
1831 Male, age 72, unknown 58.9
2850 Male, age 76, both hemispheres 57.9
1840 Male, age 53, unknown 54.7
Periaquaductal grey, lateral
nTPM: 58.9
2140 Male, age 76, both hemispheres 66.5
2272 Male, age 74, both hemispheres 58.9
2053 Male, age 18, unknown 51.4
Pretectal area
nTPM: 67.1
1944 Female, age 72, unknown 81.5
2407 Male, age 75, both hemispheres 81.2
1816 Male, age 51, unknown 71.4
2316 Male, age 76, right hemisphere 71.2
1815 Male, age 53, unknown 70.2
1817 Female, age 42, unknown 69.2
2667 Female, age 75, unknown 64.8
2273 Male, age 74, both hemispheres 63.8
2007 Male, age 72, unknown 60.9
2224 Female, age 72, unknown 58.2
2825 Male, age 18, unknown 45.0
Red nucleus
nTPM: 64.1
1865 Male, age 51, unknown 73.2
2823 Male, age 76, right hemisphere 72.2
2769 Male, age 72, unknown 68.8
2785 Male, age 18, unknown 66.6
1821 Female, age 72, unknown 64.9
2227 Male, age 72, unknown 64.8
2503 Female, age 72, unknown 64.7
1904 Male, age 53, unknown 62.6
2725 Female, age 75, unknown 61.3
2588 Male, age 74, left hemisphere 60.8
1954 Female, age 42, unknown 58.6
2584 Male, age 75, left hemisphere 50.4
Substantia nigra
nTPM: 57.4
2699 Male, age 18, unknown 65.2
2590 Female, age 75, unknown 64.0
2583 Male, age 75, right hemisphere 62.2
1851 Male, age 51, unknown 59.0
1889 Female, age 72, unknown 58.5
1916 Female, age 42, unknown 58.3
2665 Male, age 74, both hemispheres 57.5
2409 Female, age 72, unknown 53.0
1941 Male, age 53, unknown 50.8
2241 Male, age 72, unknown 45.1
Superior colliculus
nTPM: 62.4
2087 Female, age 72, unknown 69.6
2664 Male, age 75, both hemispheres 69.4
1913 Female, age 42, unknown 69.0
1995 Male, age 72, unknown 67.3
1895 Male, age 76, right hemisphere 65.4
2261 Male, age 18, unknown 64.4
1796 Male, age 53, unknown 57.1
2587 Male, age 74, left hemisphere 56.9
1839 Male, age 51, unknown 55.1
2668 Female, age 75, unknown 49.4
Ventral tegmental area
nTPM: 55.3
2410 Female, age 72, unknown 64.1
2218 Male, age 76, both hemispheres 59.7
1942 Male, age 51, unknown 56.2
1915 Female, age 42, unknown 54.4
2021 Male, age 53, unknown 53.6
2223 Female, age 72, unknown 44.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.6
Samples: 183

Max nTPM: 203.0
Min nTPM: 12.5
Std nTPM: 21.8
Median nTPM: 50.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 203.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 122.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 117.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 100.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 98.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 97.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 93.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 92.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 89.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 89.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 230.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 230.9
FF:10158-103A5 76 years, female 230.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.8
Samples: 4

Max nTPM: 81.9
Min nTPM: 39.8
Sample A Female 54.1
Sample B Female 43.4
Sample C Male 39.8
Sample D Male 81.9
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 82.4
Min nTPM: 34.1
Sample A Female 82.4
Sample B Female 44.7
Sample C Male 40.6
Sample D Male 34.1
Periaqueductal gray
nTPM: 39.5
Samples: 3

Max nTPM: 44.7
Min nTPM: 33.4
Sample B Female 40.5
Sample C Male 33.4
Sample D Male 44.7
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 28.7
Sample A Female 40.7
Sample B Female 28.7
Sample C Male 50.2
Sample D Male 51.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 17.7
Sample C Female 16.9
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70565159 Antisense, RP_050623_04_D03, Mouse strain C57BL/6J (56 days, male) 0.4
74988636 Antisense, RP_060315_05_F11, Mouse strain C57BL/6J (56 days, male) 0.2

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