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  • TISSUE

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  • ACTA2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:47.2 nTPM
HPA Brain:21.3 nTPM
GTEx:47.2 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:45.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 16.0
2565 Male, age 75, midline 19.0
2816 Male, age 47, midline 17.2
2048 Male, age 55, midline 15.7
2194 Female, age 79, both hemispheres 14.7
1981 Female, age 72, midline 13.4
Cervical spinal cord, dorsal horn
nTPM: 14.5
2721 Male, age 90, both hemispheres 19.8
2296 Male, age 66, both hemispheres 15.8
2297 Male, age 75, both hemispheres 13.8
2173 Female, age 72, unknown 13.1
1877 Male, age 55, unknown 12.5
2069 Male, age 47, both hemispheres 12.2
Cervical spinal cord, ventral horn
nTPM: 21.3
2809 Male, age 90, both hemispheres 30.0
2098 Female, age 72, unknown 29.6
2295 Male, age 66, both hemispheres 20.1
2068 Male, age 55, unknown 19.2
2480 Male, age 75, both hemispheres 15.7
2820 Female, age 79, both hemispheres 13.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 47.2
Samples: 204

Max nTPM: 534.5
Min nTPM: 1.6
Std nTPM: 70.7
Median nTPM: 26.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 534.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 459.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 454.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 398.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 313.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 240.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 217.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 187.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 160.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 145.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 143.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 132.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 117.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 102.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 92.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 88.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 86.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 78.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 75.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 74.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 73.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 72.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 65.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 65.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 62.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 62.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 61.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 60.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 60.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 60.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 60.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 59.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 59.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 55.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 55.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 53.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 52.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 51.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 51.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 50.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 49.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 49.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 48.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 48.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 46.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 46.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 46.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 46.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 46.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 45.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 45.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 43.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 43.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 43.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 42.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 42.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 42.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 42.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 42.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 41.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 41.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 40.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 40.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 40.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 39.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 39.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 38.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 37.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 37.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 36.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 36.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 36.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 35.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 35.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 34.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 34.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 34.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 32.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 32.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 31.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 30.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 30.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 30.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 30.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 30.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 30.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 29.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 29.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 28.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 28.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 28.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 28.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 27.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 27.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 26.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 26.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 26.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 26.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 26.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 26.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 26.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 26.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 26.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 25.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 25.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 25.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 25.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 25.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 24.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 24.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 23.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 23.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 23.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 23.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 22.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 22.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 22.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 22.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 22.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 22.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 21.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 21.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 21.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 21.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 21.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 21.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 20.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 20.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 20.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 20.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 20.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 20.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 20.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 20.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 19.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 19.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 19.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 19.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 19.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 18.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 18.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 18.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 18.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 17.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 17.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 17.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 17.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 17.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 16.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 16.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 16.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 15.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 15.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 15.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 14.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 14.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 14.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 14.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 14.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 14.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 14.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 14.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 14.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 14.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 13.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 13.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 13.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 13.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 13.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 12.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 12.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 12.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 12.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 12.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 12.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 11.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 11.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 11.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 10.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 10.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 10.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 10.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 10.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 9.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 9.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 9.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 9.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 8.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 7.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 7.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 6.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 6.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 5.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 5.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 33.4
FF:10181-103D1 60 years, female 46.9
FF:10159-103A6 76 years, female 19.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 45.6
Samples: 4

Max nTPM: 78.8
Min nTPM: 22.0
Sample A Female 22.4
Sample B Female 59.2
Sample C Male 78.8
Sample D Male 22.0
Ventral spinal cord
nTPM: 15.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 19.3
Sample C Male 18.9
Sample D Male 14.3

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