MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA Brain:79.3 nTPM
GTEx:56.7 nTPM
FANTOM5:379.4 Scaled Tags Per Million
Pig:68.2 nTPM
Mouse:28.4 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.7
2411 Female, age 72, unknown 93.8
1870 Female, age 42, unknown 90.0
2019 Male, age 18, unknown 87.4
1830 Male, age 51, unknown 83.4
1833 Male, age 53, unknown 80.1
2828 Female, age 72, unknown 59.7
2219 Male, age 76, both hemispheres 55.6
1827 Male, age 72, unknown 46.7
2666 Male, age 74, left hemisphere 41.1
2586 Male, age 75, left hemisphere 29.1
Dorsal raphe nucleus
nTPM: 58.0
2750 Male, age 76, both hemispheres 89.2
2016 Female, age 72, unknown 58.5
2298 Female, age 72, unknown 54.1
1828 Male, age 53, unknown 51.8
2047 Male, age 72, unknown 36.3
Inferior colliculus
nTPM: 47.0
1848 Female, age 42, unknown 51.8
2097 Female, age 72, unknown 50.1
1890 Male, age 53, unknown 46.7
2849 Male, age 72, unknown 39.3
Median raphe nucleus
nTPM: 52.1
2220 Male, age 76, midline 52.1
Periaquaductal grey, anterior
nTPM: 44.7
1947 Male, age 18, unknown 50.2
2502 Female, age 75, unknown 47.3
1795 Male, age 51, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 41.3
2464 Female, age 72, unknown 53.0
1831 Male, age 72, unknown 45.9
2850 Male, age 76, both hemispheres 37.1
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 49.7
2272 Male, age 74, both hemispheres 61.8
2053 Male, age 18, unknown 50.1
2140 Male, age 76, both hemispheres 37.4
Pretectal area
nTPM: 52.0
2273 Male, age 74, both hemispheres 67.3
1815 Male, age 53, unknown 65.5
2316 Male, age 76, right hemisphere 64.5
1817 Female, age 42, unknown 55.2
2224 Female, age 72, unknown 53.7
2007 Male, age 72, unknown 53.2
2667 Female, age 75, unknown 51.7
2407 Male, age 75, both hemispheres 45.8
2825 Male, age 18, unknown 44.1
1944 Female, age 72, unknown 38.3
1816 Male, age 51, unknown 32.8
Red nucleus
nTPM: 79.3
1865 Male, age 51, unknown 103.9
1821 Female, age 72, unknown 101.3
1904 Male, age 53, unknown 96.6
2785 Male, age 18, unknown 88.2
1954 Female, age 42, unknown 88.0
2823 Male, age 76, right hemisphere 84.8
2769 Male, age 72, unknown 84.5
2227 Male, age 72, unknown 83.9
2503 Female, age 72, unknown 78.1
2725 Female, age 75, unknown 57.8
2588 Male, age 74, left hemisphere 44.9
2584 Male, age 75, left hemisphere 39.7
Substantia nigra
nTPM: 58.7
2590 Female, age 75, unknown 83.7
2409 Female, age 72, unknown 69.3
1851 Male, age 51, unknown 67.1
2583 Male, age 75, right hemisphere 60.4
2241 Male, age 72, unknown 59.7
1889 Female, age 72, unknown 55.7
1941 Male, age 53, unknown 51.3
1916 Female, age 42, unknown 50.4
2699 Male, age 18, unknown 50.0
2665 Male, age 74, both hemispheres 39.3
Superior colliculus
nTPM: 58.1
1913 Female, age 42, unknown 97.3
1995 Male, age 72, unknown 87.9
2587 Male, age 74, left hemisphere 76.6
1895 Male, age 76, right hemisphere 60.1
1839 Male, age 51, unknown 57.6
1796 Male, age 53, unknown 47.9
2668 Female, age 75, unknown 45.5
2087 Female, age 72, unknown 41.6
2261 Male, age 18, unknown 38.3
2664 Male, age 75, both hemispheres 28.7
Ventral tegmental area
nTPM: 67.3
2410 Female, age 72, unknown 88.7
2223 Female, age 72, unknown 82.5
2218 Male, age 76, both hemispheres 63.3
2021 Male, age 53, unknown 59.4
1915 Female, age 42, unknown 55.1
1942 Male, age 51, unknown 54.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 183

Max nTPM: 198.2
Min nTPM: 17.2
Std nTPM: 28.5
Median nTPM: 49.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 198.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 173.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 170.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 133.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 131.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 127.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 125.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 122.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 118.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 114.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 111.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 379.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 379.4
FF:10158-103A5 76 years, female 379.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.7
Samples: 4

Max nTPM: 83.6
Min nTPM: 46.6
Sample A Female 58.6
Sample B Female 49.8
Sample C Male 46.6
Sample D Male 83.6
Midbrain
nTPM: 68.2
Samples: 4

Max nTPM: 149.4
Min nTPM: 31.5
Sample A Female 149.4
Sample B Female 57.9
Sample C Male 34.1
Sample D Male 31.5
Periaqueductal gray
nTPM: 40.0
Samples: 3

Max nTPM: 45.3
Min nTPM: 34.9
Sample B Female 45.3
Sample C Male 34.9
Sample D Male 39.8
Superior colliculi
nTPM: 48.0
Samples: 4

Max nTPM: 53.0
Min nTPM: 44.5
Sample A Female 47.5
Sample B Female 44.5
Sample C Male 46.8
Sample D Male 53.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 30.6
Min nTPM: 25.4
Sample A Male 25.4
Sample B Male 26.9
Sample C Female 30.6
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69174565 Antisense, RP_050329_03_A10, Mouse strain C57BL/6J (56 days, male) 1.3
72129290 Antisense, RP_051017_03_F06, Mouse strain C57BL/6J (56 days, male) 0.2

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