HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA Brain:23.0 nTPM
GTEx:30.8 nTPM
FANTOM5:140.0 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:59.0 nTPM
Allen mouse:9.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 23.0
Sample id Sample description nTPM
Hippocampus
nTPM: 22.8
2529 Female, age 94, left hemisphere 24.4
1898 Male, age 80, left hemisphere 24.3
1911 Female, age 85, right hemisphere 23.8
1855 Male, age 76, left hemisphere 22.6
2621 Female, age 67, right hemisphere 21.6
2148 Female, age 91, left hemisphere 20.3
Dentate gyrus
nTPM: 21.1
2010 Male, age 76, both hemispheres 23.6
2246 Female, age 85, both hemispheres 22.7
2528 Male, age 74, both hemispheres 22.4
1927 Female, age 91, both hemispheres 21.0
2531 Female, age 67, both hemispheres 19.9
2530 Female, age 94, left hemisphere 17.4
Entorhinal gyrus
nTPM: 20.3
1938 Female, age 85, left hemisphere 25.0
2686 Male, age 75, right hemisphere 21.4
1787 Male, age 76, left hemisphere 21.2
2117 Female, age 91, right hemisphere 20.7
2764 Male, age 80, right hemisphere 18.8
2613 Female, age 94, left hemisphere 14.6
Hippocampus, CA1
nTPM: 22.3
2749 Male, age 80, left hemisphere 25.3
2527 Male, age 74, both hemispheres 23.1
1873 Female, age 85, both hemispheres 22.2
2045 Male, age 76, both hemispheres 20.4
2082 Female, age 91, right hemisphere 20.3
Hippocampus, CA2
nTPM: 21.7
1892 Male, age 76, both hemispheres 23.8
2249 Male, age 74, both hemispheres 23.6
2113 Female, age 91, right hemisphere 21.9
1940 Female, age 85, left hemisphere 21.7
1963 Male, age 80, left hemisphere 19.9
2437 Female, age 94, left hemisphere 19.3
Hippocampus, CA3
nTPM: 22.2
1891 Female, age 85, both hemispheres 24.4
1867 Male, age 76, both hemispheres 23.9
2137 Male, age 80, left hemisphere 23.6
2436 Male, age 74, both hemispheres 23.3
2861 Female, age 67, both hemispheres 20.2
2620 Female, age 94, left hemisphere 17.9
Parahippocampal cortex
nTPM: 22.4
1850 Male, age 80, both hemispheres 24.4
2018 Male, age 76, both hemispheres 24.2
2245 Female, age 91, both hemispheres 23.7
1933 Female, age 85, both hemispheres 22.3
2250 Female, age 67, right hemisphere 22.1
2692 Male, age 74, both hemispheres 22.1
2693 Female, age 94, both hemispheres 21.8
2622 Female, age 67, right hemisphere 21.4
1990 Female, age 91, right hemisphere 21.0
2532 Female, age 72, left hemisphere 20.7
Perirhinal gyrus
nTPM: 23.0
1794 Male, age 80, right hemisphere 25.1
1841 Female, age 85, right hemisphere 25.0
1847 Female, age 91, left hemisphere 23.3
2521 Female, age 94, right hemisphere 22.3
2848 Male, age 76, right hemisphere 19.2
Subiculum
nTPM: 22.9
2042 Male, age 76, both hemispheres 24.0
1901 Male, age 80, both hemispheres 23.6
1977 Female, age 85, both hemispheres 22.8
2619 Male, age 74, both hemispheres 22.7
2438 Female, age 94, left hemisphere 22.6
2729 Female, age 91, right hemisphere 21.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 30.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.8
Samples: 255

Max nTPM: 52.4
Min nTPM: 19.5
Std nTPM: 5.0
Median nTPM: 30.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 52.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 49.5
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 47.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 46.9
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 46.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 45.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 44.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 42.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 41.8
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 40.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 40.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 140.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.0
FF:10169-103B7 60 years, female 171.3
FF:10153-102I9 76 years, female 108.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 57.5
Pig sample Sample description nTPM
Subiculum
nTPM: 48.0
Samples: 4

Max nTPM: 64.4
Min nTPM: 42.4
Sample A Female 64.4
Sample B Female 42.7
Sample C Male 42.4
Sample D Male 42.4
Dorsal hippocampus
nTPM: 57.5
Samples: 4

Max nTPM: 72.2
Min nTPM: 50.2
Sample A Female 72.2
Sample B Female 56.1
Sample C Male 51.3
Sample D Male 50.2
Entorhinal cortex
nTPM: 51.9
Samples: 4

Max nTPM: 59.1
Min nTPM: 44.3
Sample A Female 50.4
Sample B Female 59.1
Sample C Male 53.9
Sample D Male 44.3
Ventral hippocampus
nTPM: 50.4
Samples: 4

Max nTPM: 56.4
Min nTPM: 41.5
Sample A Female 54.7
Sample B Female 41.5
Sample C Male 49.0
Sample D Male 56.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 59.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 57.1
Samples: 4

Max nTPM: 63.2
Min nTPM: 50.8
Sample A Male 53.9
Sample B Male 63.2
Sample C Female 60.5
Sample D Female 50.8
Hippocampal formation
nTPM: 59.0
Samples: 4

Max nTPM: 66.8
Min nTPM: 54.9
Sample A Male 66.8
Sample B Male 54.9
Sample C Female 56.0
Sample D Female 58.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.5
69105321 Antisense, RP_050316_02_B12, Mouse strain C57BL/6J (56 days, male) 9.5

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