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RPL28
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPL28
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:882.4 nTPM
FANTOM5:417.4 Scaled Tags Per Million
Pig:126.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA050459
Glial cells Not detected
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

882.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 882.4
Samples: 300

Max nTPM: 2883.3
Min nTPM: 283.4
Std nTPM: 312.1
Median nTPM: 826.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2883.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 2172.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2153.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1898.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1757.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1664.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1638.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1622.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1544.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1514.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1511.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1478.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1461.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1461.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1459.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1387.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1379.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1353.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1339.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1332.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1319.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1310.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1308.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1296.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1295.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1285.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1283.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1281.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1258.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1252.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1245.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1242.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1222.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1217.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1215.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1214.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1208.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1202.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1191.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1188.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1184.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1175.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1171.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1168.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1167.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1164.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1155.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1153.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1153.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1152.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1151.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1142.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1140.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1139.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1138.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1133.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1130.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1129.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1124.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1120.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1116.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1111.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1101.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1099.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1096.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1088.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1086.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1079.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1073.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1071.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1069.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1065.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1063.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1055.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1054.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1051.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1045.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1030.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1025.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1024.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1022.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1022.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1020.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1016.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1009.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1007.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 985.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 981.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 981.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 980.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 977.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 974.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 970.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 968.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 965.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 963.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 952.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 945.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 939.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 931.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 930.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 928.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 927.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 927.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 926.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 925.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 920.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 920.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 914.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 911.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 905.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 903.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 899.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 898.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 897.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 897.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 896.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 895.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 889.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 879.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 878.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 876.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 876.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 870.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 869.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 868.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 868.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 868.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 867.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 866.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 864.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 864.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 859.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 854.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 854.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 851.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 848.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 846.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 844.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 843.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 842.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 840.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 839.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 835.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 832.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 832.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 831.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 829.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 829.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 826.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 826.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 824.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 823.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 821.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 821.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 820.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 818.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 814.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 813.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 813.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 810.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 810.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 809.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 806.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 805.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 799.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 799.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 795.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 793.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 792.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 788.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 782.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 781.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 781.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 780.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 779.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 779.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 778.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 776.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 776.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 774.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 771.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 766.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 765.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 762.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 761.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 761.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 755.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 752.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 752.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 749.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 744.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 743.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 740.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 738.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 738.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 736.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 734.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 730.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 729.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 729.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 728.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 727.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 724.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 717.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 716.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 715.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 713.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 711.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 709.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 707.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 707.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 706.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 701.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 699.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 695.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 692.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 691.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 682.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 682.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 681.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 680.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 678.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 677.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 676.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 673.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 673.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 671.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 671.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 670.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 660.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 659.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 659.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 658.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 653.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 653.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 644.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 644.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 637.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 634.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 631.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 630.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 626.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 626.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 621.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 614.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 613.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 610.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 609.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 609.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 608.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 608.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 603.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 602.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 595.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 595.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 594.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 593.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 591.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 590.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 583.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 583.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 578.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 576.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 572.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 568.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 566.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 562.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 560.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 558.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 557.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 555.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 551.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 549.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 542.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 533.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 526.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 526.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 517.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 516.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 513.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 509.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 509.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 503.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 502.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 502.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 501.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 498.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 494.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 486.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 483.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 475.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 472.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 471.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 457.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 408.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 393.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 376.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 309.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 283.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

417.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 417.4
FF:10164-103B2 76 years, female 417.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.5
Pig sample Sample description nTPM
Caudate
nTPM: 126.5
Samples: 4

Max nTPM: 146.0
Min nTPM: 102.3
Sample A Female 115.2
Sample B Female 146.0
Sample C Male 142.5
Sample D Male 102.3

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