We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPL19
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPL19
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:999.6 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:9.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043014
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

999.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 999.6
Samples: 300

Max nTPM: 2569.8
Min nTPM: 514.9
Std nTPM: 258.7
Median nTPM: 958.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2569.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2067.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1909.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1908.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1891.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1724.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1688.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1656.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1603.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1580.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1578.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1577.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1522.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1501.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1499.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1474.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1437.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1413.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1412.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1408.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1386.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1364.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1345.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1333.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1331.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1330.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1327.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1321.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1319.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1301.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1277.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1276.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1258.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1255.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1250.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1249.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1247.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1246.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1238.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1234.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1233.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1229.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1226.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1225.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1223.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1221.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1220.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1218.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1216.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1204.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1196.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1196.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1192.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1184.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1180.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1178.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1177.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1172.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1170.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1167.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1164.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1155.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1150.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1143.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1137.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1132.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1132.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1132.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1131.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1121.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1118.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1117.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1117.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1113.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1112.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1111.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1110.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1107.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1107.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1106.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1097.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1097.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1097.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1095.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1094.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1092.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1089.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1087.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1086.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1078.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1075.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1073.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1072.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1069.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1069.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1068.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1065.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1053.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1047.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1042.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1041.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1041.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1041.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1040.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1038.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1036.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1034.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1033.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1031.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1030.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1027.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1026.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1025.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1025.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1023.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1019.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1017.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1014.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1013.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1010.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1008.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1007.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1004.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1001.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1001.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 999.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 998.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 996.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 993.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 991.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 990.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 990.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 987.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 986.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 984.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 982.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 982.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 981.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 980.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 979.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 978.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 977.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 977.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 976.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 975.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 966.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 964.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 963.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 959.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 959.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 958.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 958.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 956.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 956.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 955.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 952.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 951.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 948.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 946.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 941.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 941.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 937.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 934.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 933.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 931.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 929.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 926.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 925.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 925.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 925.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 918.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 915.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 913.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 911.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 909.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 907.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 905.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 905.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 901.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 901.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 898.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 897.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 896.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 894.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 889.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 889.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 886.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 885.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 884.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 882.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 881.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 880.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 877.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 875.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 875.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 874.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 873.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 870.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 869.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 868.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 865.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 864.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 864.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 864.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 863.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 862.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 861.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 861.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 859.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 856.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 854.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 852.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 852.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 850.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 848.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 848.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 847.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 847.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 844.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 844.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 841.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 838.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 838.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 837.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 834.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 832.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 831.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 826.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 821.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 820.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 819.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 819.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 818.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 814.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 813.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 807.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 807.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 806.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 806.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 802.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 802.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 799.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 798.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 796.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 796.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 795.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 793.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 793.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 791.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 790.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 789.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 787.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 774.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 771.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 771.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 769.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 764.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 763.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 763.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 755.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 753.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 751.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 750.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 750.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 743.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 740.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 740.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 740.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 738.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 738.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 734.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 734.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 733.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 728.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 722.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 714.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 712.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 705.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 704.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 702.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 696.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 692.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 692.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 691.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 688.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 684.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 676.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 667.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 648.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 646.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 646.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 645.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 639.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 628.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 618.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 616.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 611.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 595.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 576.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 514.9
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.2
FF:10164-103B2 76 years, female 22.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.5
Pig sample Sample description nTPM
Caudate
nTPM: 9.5
Samples: 4

Max nTPM: 14.6
Min nTPM: 6.4
Sample A Female 14.6
Sample B Female 6.4
Sample C Male 7.6
Sample D Male 9.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo