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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2055.6 nTPM
GTEx:2055.6 nTPM
FANTOM5:21.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043014
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2055.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2055.6
Samples: 170

Max nTPM: 4816.8
Min nTPM: 1197.0
Std nTPM: 501.2
Median nTPM: 1938.6
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 4816.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4268.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3778.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3351.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3062.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3039.8
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2930.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2869.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2821.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2813.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2804.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2762.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2746.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2743.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2723.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2698.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2617.8
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2611.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2601.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2597.1
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2596.4
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2529.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2527.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2485.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2467.1
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2462.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2450.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2448.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2438.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2420.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2419.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2417.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2410.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2395.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2393.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2379.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2377.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2376.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2369.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2314.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2286.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2282.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2274.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2269.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2262.1
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2250.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2240.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2236.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2227.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2226.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2221.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2218.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2213.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2204.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2195.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2195.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2192.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2187.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2180.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2179.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2178.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2158.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2142.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2140.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2117.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2109.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2104.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2101.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2095.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2086.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2085.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2084.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2076.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2061.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2048.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2023.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2011.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2010.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1988.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1976.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1957.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1955.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1947.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1944.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1942.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1934.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1930.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1928.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1925.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1923.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1916.9
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1907.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1900.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1896.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1893.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1891.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1889.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1887.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1887.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1880.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1871.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1867.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1862.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1858.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1853.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1833.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1827.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1826.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1798.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1797.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1790.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1789.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1789.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1788.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1786.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1785.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1781.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1780.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1764.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1763.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1762.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1760.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1758.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 1755.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1745.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1724.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1717.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1714.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1703.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1701.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1695.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1689.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1681.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1671.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1660.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1660.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1653.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1645.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1636.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1633.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1622.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1614.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1611.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1609.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1605.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1597.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1595.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1591.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1579.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 1578.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1575.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1562.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1559.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1558.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1532.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1526.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1522.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1519.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1512.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1508.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1498.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1492.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1476.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1474.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1438.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1413.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1392.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1378.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1306.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1197.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 21.2
FF:10204-103F6 68 years, female 21.2

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