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CDK5RAP3
HPA
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  • SUMMARY

  • TISSUE

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  • CDK5RAP3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:70.3 nTPM
HPA:50.6 nTPM
GTEx:70.3 nTPM
FANTOM5:37.2 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA022141Antibody HPA022882Antibody HPA027883
Endocrine cells High--
Enterocytes High--
Enterocytes - Microvilli Not detected--
Glandular cells -MediumHigh
Goblet cells High--
Paneth cells High--






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.6
overview
Male, age 65
Small intestine sample 232
nTPM: 52.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 55.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 46
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 48.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 70.3
Samples: 207

Max nTPM: 137.0
Min nTPM: 31.7
Std nTPM: 19.0
Median nTPM: 70.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 137.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 135.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 127.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 118.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 117.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 113.8
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 112.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 107.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 104.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 102.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 100.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 99.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 98.0
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 96.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 95.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 94.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 94.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 94.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 93.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 93.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 93.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 93.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 92.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 92.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 91.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 91.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 89.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 88.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 88.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 86.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 86.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 86.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 85.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 85.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 85.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 85.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 85.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 84.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 84.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 84.4
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 84.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 84.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 84.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 83.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 83.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 83.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 83.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 83.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 83.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 81.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 81.2
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 81.0
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 80.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 80.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 80.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 80.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 80.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 79.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 79.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 79.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 79.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 79.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 79.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 79.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 79.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 79.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 78.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 78.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 77.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 77.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 77.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 76.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 76.9
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 76.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 76.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 76.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 76.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 76.1
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 76.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 75.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 75.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 75.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 75.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 75.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 75.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 75.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 74.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 74.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 74.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 74.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 74.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 74.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 74.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 72.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 72.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 71.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 71.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 71.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 71.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 71.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 71.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 70.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 70.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 70.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 70.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 70.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 70.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 70.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 69.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 69.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 69.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 69.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 69.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 69.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 68.8
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 68.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 68.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 68.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 68.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 68.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 67.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 67.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 66.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 66.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 65.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 65.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 65.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 64.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 64.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 64.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 64.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 63.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 63.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 63.4
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 63.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 63.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 62.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 62.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 62.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 61.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 61.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 61.3
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 61.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 61.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 59.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 59.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 59.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 58.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 58.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 58.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 57.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 57.5
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 57.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 57.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 56.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 56.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 56.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 56.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 56.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 55.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 55.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 54.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 54.2
GTEX-1192X-2526-SM-59868 50-59 years, male 53.5
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 53.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 52.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 52.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 52.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 52.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 51.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 51.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 51.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 50.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 49.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 49.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 48.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 47.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 47.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 47.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 47.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 45.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 45.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 45.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 45.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 45.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 44.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 44.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 43.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 42.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 42.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 42.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 41.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 41.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 41.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 41.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 41.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 40.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 40.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 39.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 38.6
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 38.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 37.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 37.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 35.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 33.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 31.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 37.2
FF:10024-101D6 15,40,85 years, mixed 37.2

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