MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.5 nTPM
HPA Brain:88.7 nTPM
GTEx:47.5 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:5.3 nTPM
Mouse:6.4 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.6
2586 Male, age 75, left hemisphere 121.0
1827 Male, age 72, unknown 81.0
2828 Female, age 72, unknown 65.4
2666 Male, age 74, left hemisphere 46.7
2019 Male, age 18, unknown 40.8
1870 Female, age 42, unknown 36.6
2219 Male, age 76, both hemispheres 31.0
1830 Male, age 51, unknown 29.1
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 26.5
Dorsal raphe nucleus
nTPM: 43.4
1828 Male, age 53, unknown 51.4
2298 Female, age 72, unknown 50.4
2750 Male, age 76, both hemispheres 43.0
2047 Male, age 72, unknown 41.3
2016 Female, age 72, unknown 31.0
Inferior colliculus
nTPM: 35.0
2097 Female, age 72, unknown 37.8
1890 Male, age 53, unknown 36.9
1848 Female, age 42, unknown 33.3
2849 Male, age 72, unknown 32.2
Median raphe nucleus
nTPM: 60.1
2220 Male, age 76, midline 60.1
Periaquaductal grey, anterior
nTPM: 88.6
1795 Male, age 51, unknown 120.4
2502 Female, age 75, unknown 99.0
1947 Male, age 18, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 65.9
2850 Male, age 76, both hemispheres 116.4
1831 Male, age 72, unknown 65.7
1840 Male, age 53, unknown 47.1
2464 Female, age 72, unknown 34.3
Periaquaductal grey, lateral
nTPM: 88.7
2140 Male, age 76, both hemispheres 111.4
2053 Male, age 18, unknown 81.7
2272 Male, age 74, both hemispheres 72.8
Pretectal area
nTPM: 74.3
2407 Male, age 75, both hemispheres 114.2
1816 Male, age 51, unknown 103.8
2007 Male, age 72, unknown 83.3
2667 Female, age 75, unknown 70.7
1944 Female, age 72, unknown 70.1
1815 Male, age 53, unknown 69.6
2273 Male, age 74, both hemispheres 66.2
2825 Male, age 18, unknown 63.6
2316 Male, age 76, right hemisphere 61.4
1817 Female, age 42, unknown 57.8
2224 Female, age 72, unknown 56.9
Red nucleus
nTPM: 44.7
2584 Male, age 75, left hemisphere 53.3
2725 Female, age 75, unknown 52.2
1954 Female, age 42, unknown 51.6
1865 Male, age 51, unknown 49.6
2785 Male, age 18, unknown 48.8
2823 Male, age 76, right hemisphere 44.5
2227 Male, age 72, unknown 43.0
1904 Male, age 53, unknown 41.3
1821 Female, age 72, unknown 40.7
2769 Male, age 72, unknown 40.2
2588 Male, age 74, left hemisphere 37.5
2503 Female, age 72, unknown 33.5
Substantia nigra
nTPM: 48.1
2699 Male, age 18, unknown 69.9
2583 Male, age 75, right hemisphere 57.9
1851 Male, age 51, unknown 54.8
1916 Female, age 42, unknown 54.2
1889 Female, age 72, unknown 53.3
2590 Female, age 75, unknown 50.6
1941 Male, age 53, unknown 43.5
2665 Male, age 74, both hemispheres 40.4
2409 Female, age 72, unknown 29.1
2241 Male, age 72, unknown 27.8
Superior colliculus
nTPM: 64.2
2664 Male, age 75, both hemispheres 114.8
1796 Male, age 53, unknown 113.9
2261 Male, age 18, unknown 83.0
2087 Female, age 72, unknown 71.8
1995 Male, age 72, unknown 53.5
1913 Female, age 42, unknown 45.7
2587 Male, age 74, left hemisphere 42.6
1895 Male, age 76, right hemisphere 41.6
2668 Female, age 75, unknown 38.8
1839 Male, age 51, unknown 36.4
Ventral tegmental area
nTPM: 44.2
2223 Female, age 72, unknown 54.9
2218 Male, age 76, both hemispheres 54.8
1915 Female, age 42, unknown 43.8
2021 Male, age 53, unknown 43.8
1942 Male, age 51, unknown 37.8
2410 Female, age 72, unknown 29.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 47.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.5
Samples: 183

Max nTPM: 313.5
Min nTPM: 7.4
Std nTPM: 41.0
Median nTPM: 35.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 313.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 237.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 206.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 202.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 175.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 140.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 135.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 123.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 120.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 116.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 116.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.9
Sample A Female 4.0
Sample B Female 2.9
Sample C Male 3.3
Sample D Male 3.3
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 2.6
Sample C Male 10.5
Sample D Male 4.3
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.9
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 4.9
Sample D Male 3.3
Superior colliculi
nTPM: 5.3
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 6.7
Sample C Male 5.7
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.5
Sample A Male 6.7
Sample B Male 4.5
Sample C Female 6.9
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
2521 Antisense, RP_Baylor_102997, Mouse strain C57BL/6J (56 days, male) 0.0
2522 Antisense, RP_Baylor_102997, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo