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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:144.3 nTPM
HPA Brain:81.8 nTPM
GTEx:144.3 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:152.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.0
1981 Female, age 72, midline 85.1
2194 Female, age 79, both hemispheres 66.0
2816 Male, age 47, midline 65.2
2565 Male, age 75, midline 57.3
2048 Male, age 55, midline 56.4
Cervical spinal cord, dorsal horn
nTPM: 81.4
2296 Male, age 66, both hemispheres 126.2
2173 Female, age 72, unknown 110.1
2069 Male, age 47, both hemispheres 81.2
1877 Male, age 55, unknown 65.3
2297 Male, age 75, both hemispheres 55.0
2721 Male, age 90, both hemispheres 50.5
Cervical spinal cord, ventral horn
nTPM: 81.8
2098 Female, age 72, unknown 102.3
2809 Male, age 90, both hemispheres 92.7
2068 Male, age 55, unknown 84.3
2480 Male, age 75, both hemispheres 75.6
2820 Female, age 79, both hemispheres 72.6
2295 Male, age 66, both hemispheres 63.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 144.3
Samples: 204

Max nTPM: 240.9
Min nTPM: 57.4
Std nTPM: 37.9
Median nTPM: 146.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 240.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 235.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 234.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 233.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 230.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 228.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 227.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 222.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 220.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 219.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 216.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 210.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 209.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 208.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 206.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 205.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 199.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 196.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 194.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 194.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 193.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 191.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 188.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 186.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 185.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 183.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 182.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 179.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 179.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 178.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 178.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 177.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 177.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 176.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 174.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 174.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 173.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 172.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 170.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 170.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 169.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 168.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 168.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 168.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 168.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 167.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 167.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 165.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 165.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 165.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 164.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 163.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 163.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 162.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 161.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 161.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 160.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 160.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 159.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 159.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 159.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 159.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 159.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 159.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 158.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 158.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 157.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 156.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 156.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 156.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 156.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 155.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 155.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 155.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 154.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 154.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 154.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 154.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 154.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 154.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 152.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 152.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 151.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 151.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 150.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 150.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 150.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 149.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 149.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 149.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 148.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 147.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 146.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 146.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 145.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 144.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 144.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 142.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 142.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 142.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 141.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 141.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 140.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 139.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 138.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 138.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 138.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 137.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 136.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 135.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 134.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 133.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 133.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 132.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 132.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 132.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 132.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 132.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 132.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 131.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 131.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 130.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 129.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 128.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 128.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 128.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 128.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 128.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 127.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 126.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 124.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 124.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 123.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 122.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 121.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 121.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 120.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 120.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 120.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 119.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 119.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 118.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 118.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 115.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 115.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 115.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 114.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 114.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 114.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 112.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 112.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 111.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 110.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 110.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 110.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 110.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 109.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 109.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 108.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 108.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 108.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 107.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 105.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 102.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 101.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 99.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 96.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 96.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 95.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 93.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 91.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 90.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 88.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 88.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 85.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 83.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 81.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 81.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 80.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 80.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 79.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 78.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 70.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 69.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 68.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 67.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 61.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 75.1
FF:10181-103D1 60 years, female 82.4
FF:10159-103A6 76 years, female 67.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 131.1
Samples: 4

Max nTPM: 138.1
Min nTPM: 122.7
Sample A Female 130.9
Sample B Female 132.6
Sample C Male 122.7
Sample D Male 138.1
Ventral spinal cord
nTPM: 152.8
Samples: 4

Max nTPM: 177.5
Min nTPM: 136.1
Sample A Female 156.4
Sample B Female 136.1
Sample C Male 141.3
Sample D Male 177.5

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