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  • COL1A1
TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
Tissue methods
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ovarian stroma cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1143.7 nTPM
HPA:1143.7 nTPM
GTEx:430.8 nTPM
FANTOM5:731.3 Scaled Tags Per Million
OVARY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011795
Ovarian stroma cells High



OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1143.7
overview
Female, age 64
Ovary sample 192
nTPM: 330.6
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 169.9
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 80.9
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 881.5
N/A
Female, age 16
Ovary sample 3663
nTPM: 317.5
N/A
Female, age 20
Ovary sample 3664
nTPM: 890.3
N/A
Female, age 32
Ovary sample 3665
nTPM: 5335.3

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.8
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 430.8
Samples: 193

Max nTPM: 3387.4
Min nTPM: 86.2
Std nTPM: 351.0
Median nTPM: 334.9
GTEX-SE5C-0826-SM-HL9T7 40-49 years, female 3387.4
GTEX-OHPN-1626-SM-GNTBJ 60-69 years, female 2049.5
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 1686.3
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 1464.7
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 1303.1
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 1233.4
GTEX-14JG6-0626-SM-68716 30-39 years, female 1222.8
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 1123.1
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 1116.3
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 1031.0
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 1019.0
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 873.0
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 857.3
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 832.5
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 792.4
GTEX-15EOM-1526-SM-68723 20-29 years, female 769.2
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 762.4
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 760.4
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 736.9
GTEX-1R9JW-1226-SM-F2I1P 30-39 years, female 689.0
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 682.3
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 674.5
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 666.0
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 664.2
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 654.8
GTEX-QCQG-1426-SM-48U22 50-59 years, female 649.1
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 648.2
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 644.1
GTEX-S341-0726-SM-4AD5R 40-49 years, female 641.5
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 635.8
GTEX-Q734-0726-SM-48TZP 40-49 years, female 632.5
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 627.6
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 611.1
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 599.8
GTEX-14BIN-1426-SM-664NI 50-59 years, female 591.0
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 577.1
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 573.1
GTEX-1399S-2126-SM-G8OM9 30-39 years, female 564.5
GTEX-P78B-1926-SM-3P616 40-49 years, female 551.5
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 549.1
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 545.2
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 540.8
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 529.8
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 528.5
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 525.8
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 513.4
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 511.0
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 508.8
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 493.8
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 493.4
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 489.1
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 488.9
GTEX-1RNTQ-1726-SM-F2I39 20-29 years, female 487.5
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 486.8
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 475.7
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 470.3
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 468.6
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 457.3
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 450.9
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 449.7
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 445.7
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 442.3
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 422.4
GTEX-13X6H-1026-SM-5MR8F 50-59 years, female 421.4
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 417.8
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 417.0
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 414.1
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 412.8
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 407.3
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 406.4
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 402.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 400.2
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 400.1
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 395.3
GTEX-131XW-2726-SM-HL9U9 50-59 years, female 389.6
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 388.2
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 386.4
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 386.1
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 385.0
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 382.0
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 380.4
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 375.2
GTEX-QVJO-3126-SM-COH22 60-69 years, female 372.2
GTEX-1MCYP-1426-SM-F2I3H 20-29 years, female 371.3
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 364.4
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 364.3
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 363.4
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 361.9
GTEX-14PKV-1226-SM-6871T 20-29 years, female 361.8
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 346.7
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 345.7
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 345.5
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 344.1
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 342.9
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 340.2
GTEX-WI4N-2526-SM-4M9QQ 40-49 years, female 337.1
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 334.9
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 331.9
GTEX-1IE54-2126-SM-GA8ZX 40-49 years, female 328.9
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 326.7
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 326.3
GTEX-11I78-1926-SM-59878 50-59 years, female 325.2
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 324.1
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 323.9
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 322.2
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 316.4
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 315.4
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 312.8
GTEX-1NUQO-1726-SM-HK7A8 20-29 years, female 312.6
GTEX-18D9A-0826-SM-718C1 30-39 years, female 310.5
GTEX-ZE7O-2226-SM-GNTC2 50-59 years, female 310.2
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 309.6
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 304.4
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 300.7
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 300.0
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 299.1
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 294.1
GTEX-15SHU-2726-SM-HAV2W 40-49 years, female 291.4
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 291.0
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 289.6
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 288.0
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 286.2
GTEX-W5X1-2026-SM-GPRX9 40-49 years, female 285.0
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 284.9
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 284.6
GTEX-RU72-2226-SM-46MUE 50-59 years, female 284.4
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 283.8
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 281.5
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 277.4
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 276.9
GTEX-13SLX-2426-SM-664OM 50-59 years, female 276.3
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 274.3
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 273.0
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 271.9
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 271.3
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 269.2
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 268.1
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 267.6
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 267.4
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 264.0
GTEX-R45C-2526-SM-GRR28 60-69 years, female 263.7
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 262.7
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 256.7
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 254.8
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 253.5
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 252.9
GTEX-145ME-1226-SM-5MR87 40-49 years, female 250.8
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 246.3
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 243.2
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 242.9
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 242.6
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 238.8
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 235.3
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 233.6
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 233.5
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 229.4
GTEX-R55G-1526-SM-48FER 40-49 years, female 227.9
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 227.7
GTEX-ZTPG-1926-SM-HAUZ1 20-29 years, female 224.0
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 220.9
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 217.7
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 216.7
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 214.8
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 213.7
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 206.5
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 201.8
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 201.5
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 197.1
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 190.8
GTEX-1I1CD-2026-SM-GA91R 60-69 years, female 185.5
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 177.9
GTEX-183WM-1926-SM-72D5F 70-79 years, female 175.6
GTEX-16NPV-2326-SM-HL9UF 50-59 years, female 174.5
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 172.0
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 170.9
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 166.0
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 165.6
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 161.7
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 160.3
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 157.6
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 154.1
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 152.7
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 146.2
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 145.5
GTEX-13NZ8-2526-SM-H65ZM 60-69 years, female 143.8
GTEX-S32W-1226-SM-4AD67 50-59 years, female 141.3
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 128.4
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 119.7
GTEX-17F9Y-2226-SM-HL9UK 70-79 years, female 112.5
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 108.7
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 102.8
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 92.4
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 86.2
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

731.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 731.3
FF:10020-101D2 47,75,84 years, female 731.3

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