MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.7 nTPM
HPA Brain:45.3 nTPM
GTEx:94.7 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:109.8 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2019 Male, age 18, unknown 47.2
1827 Male, age 72, unknown 46.3
2411 Female, age 72, unknown 42.3
2828 Female, age 72, unknown 39.2
1870 Female, age 42, unknown 38.0
2219 Male, age 76, both hemispheres 33.9
1833 Male, age 53, unknown 33.8
2586 Male, age 75, left hemisphere 33.8
2666 Male, age 74, left hemisphere 33.8
1830 Male, age 51, unknown 33.5
Dorsal raphe nucleus
nTPM: 41.6
2298 Female, age 72, unknown 48.2
1828 Male, age 53, unknown 44.1
2750 Male, age 76, both hemispheres 40.7
2016 Female, age 72, unknown 38.7
2047 Male, age 72, unknown 36.1
Inferior colliculus
nTPM: 38.7
2097 Female, age 72, unknown 43.1
1890 Male, age 53, unknown 40.3
2849 Male, age 72, unknown 35.9
1848 Female, age 42, unknown 35.5
Median raphe nucleus
nTPM: 38.1
2220 Male, age 76, midline 38.1
Periaquaductal grey, anterior
nTPM: 39.8
1947 Male, age 18, unknown 41.3
1795 Male, age 51, unknown 40.5
2502 Female, age 75, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 36.7
1840 Male, age 53, unknown 40.5
2464 Female, age 72, unknown 38.3
1831 Male, age 72, unknown 34.6
2850 Male, age 76, both hemispheres 33.3
Periaquaductal grey, lateral
nTPM: 38.6
2272 Male, age 74, both hemispheres 46.3
2140 Male, age 76, both hemispheres 35.6
2053 Male, age 18, unknown 34.0
Pretectal area
nTPM: 45.3
2007 Male, age 72, unknown 56.2
1816 Male, age 51, unknown 54.3
1817 Female, age 42, unknown 52.1
2273 Male, age 74, both hemispheres 51.5
1944 Female, age 72, unknown 51.2
1815 Male, age 53, unknown 48.8
2667 Female, age 75, unknown 43.6
2224 Female, age 72, unknown 40.4
2825 Male, age 18, unknown 37.5
2407 Male, age 75, both hemispheres 32.7
2316 Male, age 76, right hemisphere 29.7
Red nucleus
nTPM: 39.9
1821 Female, age 72, unknown 46.3
2725 Female, age 75, unknown 44.8
2785 Male, age 18, unknown 44.0
1865 Male, age 51, unknown 41.8
2823 Male, age 76, right hemisphere 41.7
1954 Female, age 42, unknown 40.0
2503 Female, age 72, unknown 40.0
2588 Male, age 74, left hemisphere 37.5
2227 Male, age 72, unknown 37.3
1904 Male, age 53, unknown 37.2
2769 Male, age 72, unknown 36.8
2584 Male, age 75, left hemisphere 31.8
Substantia nigra
nTPM: 43.8
1916 Female, age 42, unknown 59.4
1889 Female, age 72, unknown 53.7
1851 Male, age 51, unknown 46.9
1941 Male, age 53, unknown 46.0
2241 Male, age 72, unknown 44.5
2409 Female, age 72, unknown 41.1
2699 Male, age 18, unknown 38.1
2590 Female, age 75, unknown 37.5
2665 Male, age 74, both hemispheres 36.2
2583 Male, age 75, right hemisphere 34.8
Superior colliculus
nTPM: 40.5
2087 Female, age 72, unknown 45.8
2668 Female, age 75, unknown 44.4
2587 Male, age 74, left hemisphere 43.1
1895 Male, age 76, right hemisphere 43.0
2261 Male, age 18, unknown 42.5
1796 Male, age 53, unknown 41.5
1995 Male, age 72, unknown 37.8
2664 Male, age 75, both hemispheres 36.0
1913 Female, age 42, unknown 35.4
1839 Male, age 51, unknown 35.0
Ventral tegmental area
nTPM: 40.4
2410 Female, age 72, unknown 50.0
2218 Male, age 76, both hemispheres 47.6
1915 Female, age 42, unknown 42.6
1942 Male, age 51, unknown 36.4
2223 Female, age 72, unknown 33.8
2021 Male, age 53, unknown 31.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 94.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.7
Samples: 183

Max nTPM: 187.0
Min nTPM: 41.4
Std nTPM: 24.9
Median nTPM: 91.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 187.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 170.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 163.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 157.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 148.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 144.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 142.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 141.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 141.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 141.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 140.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 13.8
Sample C Male 12.6
Sample D Male 16.2
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.4
Sample A Female 13.7
Sample B Female 13.9
Sample C Male 12.4
Sample D Male 14.1
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.4
Min nTPM: 12.8
Sample B Female 14.4
Sample C Male 12.8
Sample D Male 14.1
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 11.3
Sample C Male 15.6
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 109.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.8
Samples: 4

Max nTPM: 115.8
Min nTPM: 105.0
Sample A Male 115.8
Sample B Male 105.0
Sample C Female 105.2
Sample D Female 113.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68744785 Antisense, RP_050208_01_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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