MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:117.8 nTPM
HPA Brain:98.3 nTPM
GTEx:117.8 nTPM
FANTOM5:298.2 Scaled Tags Per Million
Pig:27.3 nTPM
Mouse:53.7 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.7
1830 Male, age 51, unknown 101.6
1833 Male, age 53, unknown 100.5
2219 Male, age 76, both hemispheres 97.7
1870 Female, age 42, unknown 93.3
1827 Male, age 72, unknown 91.0
2411 Female, age 72, unknown 89.4
2828 Female, age 72, unknown 88.7
2019 Male, age 18, unknown 86.0
2666 Male, age 74, left hemisphere 83.5
2586 Male, age 75, left hemisphere 55.3
Dorsal raphe nucleus
nTPM: 79.3
2016 Female, age 72, unknown 88.6
2750 Male, age 76, both hemispheres 88.6
1828 Male, age 53, unknown 78.4
2298 Female, age 72, unknown 70.5
2047 Male, age 72, unknown 70.3
Inferior colliculus
nTPM: 87.2
2849 Male, age 72, unknown 89.9
1890 Male, age 53, unknown 89.1
1848 Female, age 42, unknown 87.1
2097 Female, age 72, unknown 82.5
Median raphe nucleus
nTPM: 93.3
2220 Male, age 76, midline 93.3
Periaquaductal grey, anterior
nTPM: 85.3
2502 Female, age 75, unknown 89.4
1947 Male, age 18, unknown 87.1
1795 Male, age 51, unknown 79.3
Periaquaductal grey, dorsal
nTPM: 91.9
2850 Male, age 76, both hemispheres 99.3
1831 Male, age 72, unknown 98.7
2464 Female, age 72, unknown 93.8
1840 Male, age 53, unknown 75.7
Periaquaductal grey, lateral
nTPM: 89.2
2140 Male, age 76, both hemispheres 94.7
2053 Male, age 18, unknown 90.6
2272 Male, age 74, both hemispheres 82.4
Pretectal area
nTPM: 87.4
2316 Male, age 76, right hemisphere 94.9
2667 Female, age 75, unknown 92.6
1815 Male, age 53, unknown 92.5
2407 Male, age 75, both hemispheres 90.6
2825 Male, age 18, unknown 88.3
2007 Male, age 72, unknown 86.6
2224 Female, age 72, unknown 86.3
1816 Male, age 51, unknown 86.1
2273 Male, age 74, both hemispheres 85.1
1817 Female, age 42, unknown 79.6
1944 Female, age 72, unknown 79.1
Red nucleus
nTPM: 98.3
2503 Female, age 72, unknown 119.0
2823 Male, age 76, right hemisphere 112.1
1865 Male, age 51, unknown 108.7
1904 Male, age 53, unknown 105.2
1954 Female, age 42, unknown 105.1
2227 Male, age 72, unknown 99.0
2769 Male, age 72, unknown 94.7
2588 Male, age 74, left hemisphere 93.5
1821 Female, age 72, unknown 93.3
2725 Female, age 75, unknown 87.8
2785 Male, age 18, unknown 86.4
2584 Male, age 75, left hemisphere 75.0
Substantia nigra
nTPM: 80.6
2409 Female, age 72, unknown 103.8
2699 Male, age 18, unknown 92.8
1889 Female, age 72, unknown 81.5
2583 Male, age 75, right hemisphere 80.9
2590 Female, age 75, unknown 80.1
2665 Male, age 74, both hemispheres 79.3
1941 Male, age 53, unknown 79.0
1851 Male, age 51, unknown 71.0
2241 Male, age 72, unknown 69.6
1916 Female, age 42, unknown 68.4
Superior colliculus
nTPM: 88.4
1913 Female, age 42, unknown 109.0
1995 Male, age 72, unknown 99.9
1895 Male, age 76, right hemisphere 99.8
2668 Female, age 75, unknown 87.4
2087 Female, age 72, unknown 86.9
1839 Male, age 51, unknown 85.7
2587 Male, age 74, left hemisphere 84.4
2261 Male, age 18, unknown 82.8
1796 Male, age 53, unknown 80.6
2664 Male, age 75, both hemispheres 67.8
Ventral tegmental area
nTPM: 83.8
2223 Female, age 72, unknown 92.0
2218 Male, age 76, both hemispheres 88.2
2021 Male, age 53, unknown 83.6
1942 Male, age 51, unknown 81.3
2410 Female, age 72, unknown 79.9
1915 Female, age 42, unknown 77.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 117.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.8
Samples: 183

Max nTPM: 290.5
Min nTPM: 51.0
Std nTPM: 35.3
Median nTPM: 107.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 290.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 232.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 218.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 214.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 205.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 201.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 194.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 190.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 189.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 185.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 179.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 298.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 298.2
FF:10158-103A5 76 years, female 298.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 34.8
Min nTPM: 15.5
Sample A Female 15.5
Sample B Female 26.2
Sample C Male 23.4
Sample D Male 34.8
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 28.0
Min nTPM: 20.4
Sample A Female 20.4
Sample B Female 28.0
Sample C Male 23.2
Sample D Male 27.7
Periaqueductal gray
nTPM: 27.4
Samples: 3

Max nTPM: 30.5
Min nTPM: 23.6
Sample B Female 28.0
Sample C Male 23.6
Sample D Male 30.5
Superior colliculi
nTPM: 21.8
Samples: 4

Max nTPM: 27.0
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 22.4
Sample C Male 23.1
Sample D Male 27.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.7
Samples: 4

Max nTPM: 57.1
Min nTPM: 49.1
Sample A Male 54.7
Sample B Male 57.1
Sample C Female 53.8
Sample D Female 49.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69407511 Antisense, RP_050414_01_G09, Mouse strain C57BL/6J (56 days, male) 2.2

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