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  • TISSUE

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BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:8.9 nTPM
HPA Brain:40.3 nTPM
GTEx:8.9 nTPM
Pig:27.3 nTPM
Mouse:33.9 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Annotated protein expression
Pending normal tissue analysis

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.3
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 30.0
2226 Male, age 75, left hemisphere 37.4
1961 Female, age 42, unknown 22.6
Dorsomedial nucleus
nTPM: 40.3
1989 Male, age 62, unknown 72.3
2041 Female, age 72, unknown 24.8
2017 Female, age 42, unknown 23.9
Lateral hypothalamic area
nTPM: 24.0
2228 Male, age 66, unknown 25.8
1791 Male, age 80, right hemisphere 24.2
2412 Male, age 62, unknown 23.2
2271 Male, age 75, both hemispheres 22.9
Mammillary body
nTPM: 32.7
2413 Male, age 66, unknown 47.8
1923 Female, age 72, unknown 32.0
1945 Male, age 80, right hemisphere 31.6
1834 Female, age 42, unknown 29.0
1948 Female, age 72, unknown 23.0
Paraventricular nucleus
nTPM: 24.6
2700 Male, age 62, unknown 24.6
Preoptic area
nTPM: 20.7
2414 Female, age 72, unknown 21.5
1907 Male, age 80, right hemisphere 21.3
1861 Female, age 42, unknown 19.4
Supraoptic nucleus
nTPM: 28.0
2835 Female, age 72, unknown 29.2
2043 Male, age 62, unknown 28.2
1894 Female, age 72, unknown 26.6
Ventromedial nucleus
nTPM: 21.3
1822 Female, age 42, unknown 24.5
1982 Female, age 72, unknown 18.2

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.9
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 8.9
Samples: 257

Max nTPM: 55.0
Min nTPM: 2.1
Std nTPM: 5.7
Median nTPM: 7.6
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 55.0
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 44.7
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 35.8
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 31.8
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 29.5
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 27.8
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 26.2
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 24.3
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 23.9
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 22.3
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 19.7
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 17.6
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 16.5
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 15.9
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 15.4
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 15.0
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 14.0
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 13.7
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 13.6
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 13.3
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 12.9
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 12.8
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 12.8
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 12.7
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 12.6
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 12.5
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 12.5
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 12.3
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 12.3
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 12.2
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 12.1
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 12.1
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 11.9
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 11.9
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 11.9
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 11.9
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 11.8
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 11.7
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 11.6
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 11.4
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 11.3
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 11.2
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 11.0
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 11.0
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 10.9
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 10.9
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 10.9
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 10.8
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 10.7
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 10.6
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 10.5
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 10.5
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 10.4
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 10.4
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 10.4
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 10.3
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 10.3
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 10.3
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 10.3
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 10.3
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 10.1
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 10.1
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 10.1
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 10.1
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 10.1
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 10.0
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 9.9
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 9.8
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 9.8
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 9.8
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 9.6
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 9.6
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 9.5
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 9.5
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 9.5
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 9.5
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 9.4
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 9.4
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 9.3
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 9.3
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 9.3
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 9.2
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 9.1
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 9.0
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 9.0
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 9.0
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 8.9
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 8.9
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 8.9
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 8.8
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 8.7
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 8.7
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 8.7
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 8.6
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 8.6
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 8.6
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 8.5
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 8.5
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 8.5
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 8.4
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 8.4
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 8.4
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 8.4
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 8.4
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 8.3
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 8.3
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 8.2
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 8.2
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 8.2
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 8.1
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 8.1
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 8.0
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 8.0
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 7.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 7.9
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 7.9
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 7.9
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 7.8
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 7.7
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 7.7
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 7.7
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 7.7
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 7.7
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 7.6
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 7.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 7.6
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 7.6
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 7.6
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 7.6
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 7.6
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 7.6
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 7.6
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 7.5
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 7.5
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 7.5
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 7.5
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 7.5
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 7.4
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 7.3
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 7.3
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 7.3
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 7.3
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 7.2
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 7.2
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 7.1
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 7.1
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 7.1
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 7.1
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 7.1
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 7.1
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 7.1
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 7.1
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 7.0
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 7.0
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 7.0
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 7.0
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 7.0
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 7.0
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 7.0
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 6.9
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 6.9
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 6.8
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 6.8
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 6.8
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 6.8
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 6.8
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 6.8
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 6.8
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 6.7
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 6.7
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 6.7
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 6.7
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 6.7
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 6.6
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 6.6
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 6.6
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 6.6
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 6.5
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 6.5
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 6.5
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 6.4
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 6.4
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 6.4
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 6.4
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 6.3
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 6.3
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 6.3
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 6.2
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 6.2
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 6.2
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 6.2
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 6.1
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 6.1
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 6.1
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 6.1
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 6.1
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 6.1
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 6.0
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 6.0
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 6.0
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 6.0
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 6.0
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 6.0
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 5.9
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 5.9
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 5.9
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 5.8
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 5.8
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 5.8
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 5.8
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 5.7
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 5.7
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 5.6
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 5.6
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 5.6
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 5.5
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 5.5
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 5.4
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 5.3
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 5.2
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 5.2
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 5.1
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 5.0
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 5.0
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 4.9
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 4.9
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 4.8
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 4.8
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 4.8
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 4.6
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 4.6
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 4.5
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 4.4
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 4.4
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 4.3
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 4.2
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 4.1
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 4.1
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 4.1
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 4.1
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 4.1
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 4.1
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 4.0
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 3.8
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 3.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 3.8
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 3.6
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 3.5
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 3.4
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 3.4
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 3.0
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 3.0
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 2.9
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 2.8
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 2.7
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 2.5
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 2.1
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.3
Pig sample Sample description nTPM
Hypothalamus
nTPM: 27.4
Samples: 4

Max nTPM: 32.4
Min nTPM: 22.5
Sample A Female 29.7
Sample B Female 22.5
Sample C Male 32.4
Sample D Male 24.8

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.9
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 33.9
Samples: 4

Max nTPM: 35.5
Min nTPM: 32.4
Sample A Male 35.5
Sample B Male 32.9
Sample C Female 32.4
Sample D Female 34.9

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 2.0
566 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 3.5
565 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 2.7
567 Sense, RPS_Baylor_37116, Mouse strain C57BL/6J (56 days, male) 0.5

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