MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.0 nTPM
HPA Brain:243.4 nTPM
GTEx:99.0 nTPM
FANTOM5:404.3 Scaled Tags Per Million
Pig:199.9 nTPM
Mouse:471.6 nTPM
Allen mouse:7.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 243.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 200.4
1827 Male, age 72, unknown 231.4
2666 Male, age 74, left hemisphere 221.1
2411 Female, age 72, unknown 218.7
2019 Male, age 18, unknown 214.1
1870 Female, age 42, unknown 197.9
1833 Male, age 53, unknown 189.8
2219 Male, age 76, both hemispheres 186.3
2586 Male, age 75, left hemisphere 184.3
1830 Male, age 51, unknown 183.1
2828 Female, age 72, unknown 176.9
Dorsal raphe nucleus
nTPM: 186.3
2750 Male, age 76, both hemispheres 206.1
2298 Female, age 72, unknown 198.8
1828 Male, age 53, unknown 191.0
2047 Male, age 72, unknown 181.0
2016 Female, age 72, unknown 154.6
Inferior colliculus
nTPM: 178.9
2097 Female, age 72, unknown 205.2
1890 Male, age 53, unknown 184.2
2849 Male, age 72, unknown 164.8
1848 Female, age 42, unknown 161.4
Median raphe nucleus
nTPM: 243.4
2220 Male, age 76, midline 243.4
Periaquaductal grey, anterior
nTPM: 186.7
2502 Female, age 75, unknown 190.7
1947 Male, age 18, unknown 185.8
1795 Male, age 51, unknown 183.5
Periaquaductal grey, dorsal
nTPM: 182.0
2850 Male, age 76, both hemispheres 203.7
1831 Male, age 72, unknown 201.8
1840 Male, age 53, unknown 162.6
2464 Female, age 72, unknown 160.0
Periaquaductal grey, lateral
nTPM: 175.9
2272 Male, age 74, both hemispheres 183.6
2053 Male, age 18, unknown 181.2
2140 Male, age 76, both hemispheres 163.0
Pretectal area
nTPM: 223.5
1816 Male, age 51, unknown 301.2
1815 Male, age 53, unknown 278.7
1817 Female, age 42, unknown 277.2
2007 Male, age 72, unknown 265.6
1944 Female, age 72, unknown 263.9
2224 Female, age 72, unknown 192.4
2667 Female, age 75, unknown 191.4
2273 Male, age 74, both hemispheres 187.3
2825 Male, age 18, unknown 176.4
2407 Male, age 75, both hemispheres 176.0
2316 Male, age 76, right hemisphere 148.0
Red nucleus
nTPM: 200.1
1821 Female, age 72, unknown 235.4
2584 Male, age 75, left hemisphere 221.4
2725 Female, age 75, unknown 216.5
2785 Male, age 18, unknown 212.2
2588 Male, age 74, left hemisphere 211.5
2503 Female, age 72, unknown 199.8
1954 Female, age 42, unknown 199.1
1865 Male, age 51, unknown 195.3
2823 Male, age 76, right hemisphere 192.1
1904 Male, age 53, unknown 183.9
2769 Male, age 72, unknown 167.4
2227 Male, age 72, unknown 165.9
Substantia nigra
nTPM: 228.9
1889 Female, age 72, unknown 258.3
1916 Female, age 42, unknown 249.4
1941 Male, age 53, unknown 245.5
2241 Male, age 72, unknown 241.8
1851 Male, age 51, unknown 232.2
2409 Female, age 72, unknown 220.7
2665 Male, age 74, both hemispheres 218.0
2699 Male, age 18, unknown 210.9
2583 Male, age 75, right hemisphere 208.0
2590 Female, age 75, unknown 203.9
Superior colliculus
nTPM: 196.0
2668 Female, age 75, unknown 223.1
2261 Male, age 18, unknown 221.5
2087 Female, age 72, unknown 215.7
1913 Female, age 42, unknown 207.1
2587 Male, age 74, left hemisphere 206.2
1796 Male, age 53, unknown 190.9
1995 Male, age 72, unknown 183.7
1839 Male, age 51, unknown 174.6
2664 Male, age 75, both hemispheres 170.2
1895 Male, age 76, right hemisphere 167.1
Ventral tegmental area
nTPM: 219.6
2218 Male, age 76, both hemispheres 254.0
2410 Female, age 72, unknown 235.7
2223 Female, age 72, unknown 223.4
1915 Female, age 42, unknown 216.7
1942 Male, age 51, unknown 195.6
2021 Male, age 53, unknown 192.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 99.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.0
Samples: 183

Max nTPM: 178.7
Min nTPM: 57.4
Std nTPM: 20.4
Median nTPM: 97.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 178.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 163.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 159.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 149.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 145.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 140.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 138.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 138.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 137.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 135.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 135.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 404.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 404.3
FF:10158-103A5 76 years, female 404.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 199.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 174.4
Samples: 4

Max nTPM: 222.0
Min nTPM: 133.7
Sample A Female 222.0
Sample B Female 155.6
Sample C Male 186.3
Sample D Male 133.7
Midbrain
nTPM: 199.9
Samples: 4

Max nTPM: 230.2
Min nTPM: 178.9
Sample A Female 230.2
Sample B Female 178.9
Sample C Male 198.4
Sample D Male 192.1
Periaqueductal gray
nTPM: 157.1
Samples: 3

Max nTPM: 173.7
Min nTPM: 140.3
Sample B Female 157.2
Sample C Male 173.7
Sample D Male 140.3
Superior colliculi
nTPM: 184.1
Samples: 4

Max nTPM: 211.0
Min nTPM: 141.2
Sample A Female 211.0
Sample B Female 141.2
Sample C Male 204.1
Sample D Male 180.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 471.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 471.6
Samples: 4

Max nTPM: 481.7
Min nTPM: 457.7
Sample A Male 457.7
Sample B Male 479.2
Sample C Female 481.7
Sample D Female 467.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
70429369 Antisense, RP_050614_01_E07, Mouse strain C57BL/6J (56 days, male) 15.2
75931623 Antisense, RP_060606_01_E09, Mouse strain C57BL/6J (56 days, male) 0.2

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