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  • TISSUE

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  • PMP22
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:229.5 nTPM
HPA Brain:152.3 nTPM
GTEx:229.5 nTPM
FANTOM5:391.0 Scaled Tags Per Million
Pig:1023.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 128.9
1981 Female, age 72, midline 172.8
2048 Male, age 55, midline 147.3
2816 Male, age 47, midline 117.3
2194 Female, age 79, both hemispheres 117.1
2565 Male, age 75, midline 90.1
Cervical spinal cord, dorsal horn
nTPM: 152.3
2296 Male, age 66, both hemispheres 246.0
2173 Female, age 72, unknown 229.5
2069 Male, age 47, both hemispheres 140.1
1877 Male, age 55, unknown 129.7
2297 Male, age 75, both hemispheres 85.7
2721 Male, age 90, both hemispheres 82.8
Cervical spinal cord, ventral horn
nTPM: 137.2
2098 Female, age 72, unknown 178.5
2068 Male, age 55, unknown 162.0
2820 Female, age 79, both hemispheres 145.4
2809 Male, age 90, both hemispheres 128.3
2480 Male, age 75, both hemispheres 115.5
2295 Male, age 66, both hemispheres 93.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 229.5
Samples: 204

Max nTPM: 953.6
Min nTPM: 36.7
Std nTPM: 109.8
Median nTPM: 226.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 953.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 807.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 528.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 469.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 434.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 432.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 408.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 399.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 395.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 391.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 389.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 386.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 375.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 370.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 365.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 349.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 348.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 345.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 344.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 339.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 337.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 337.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 335.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 332.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 331.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 329.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 326.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 315.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 314.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 313.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 312.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 312.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 311.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 308.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 308.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 303.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 303.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 303.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 302.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 302.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 300.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 300.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 297.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 294.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 293.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 293.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 292.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 290.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 289.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 287.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 287.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 284.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 280.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 280.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 277.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 276.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 274.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 273.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 271.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 270.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 269.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 268.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 268.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 267.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 266.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 265.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 265.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 263.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 261.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 259.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 259.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 257.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 256.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 256.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 254.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 253.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 252.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 252.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 250.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 247.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 246.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 246.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 246.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 246.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 244.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 241.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 240.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 240.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 240.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 237.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 237.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 236.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 235.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 234.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 231.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 230.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 230.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 229.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 229.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 228.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 228.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 227.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 225.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 225.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 225.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 224.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 224.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 223.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 222.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 219.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 218.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 217.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 217.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 216.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 210.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 210.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 208.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 207.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 207.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 204.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 204.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 203.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 199.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 198.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 196.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 195.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 195.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 189.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 185.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 185.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 183.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 182.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 180.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 178.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 178.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 176.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 176.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 173.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 169.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 168.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 167.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 164.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 163.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 162.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 162.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 162.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 162.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 161.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 161.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 161.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 157.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 156.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 152.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 152.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 149.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 149.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 148.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 147.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 147.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 147.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 146.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 146.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 143.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 142.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 141.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 140.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 137.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 132.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 130.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 128.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 128.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 127.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 126.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 126.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 123.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 123.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 120.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 119.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 117.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 116.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 115.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 114.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 112.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 112.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 110.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 104.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 104.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 101.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 100.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 93.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 88.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 82.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 76.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 69.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 68.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 66.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 66.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 61.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 50.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 49.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 36.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

391.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 391.0
FF:10181-103D1 60 years, female 426.6
FF:10159-103A6 76 years, female 355.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1023.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1023.1
Samples: 4

Max nTPM: 2018.3
Min nTPM: 112.3
Sample A Female 112.3
Sample B Female 1251.7
Sample C Male 2018.3
Sample D Male 710.2
Ventral spinal cord
nTPM: 329.6
Samples: 4

Max nTPM: 718.4
Min nTPM: 139.0
Sample A Female 139.0
Sample B Female 209.3
Sample C Male 718.4
Sample D Male 251.5

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