MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA Brain:31.6 nTPM
GTEx:30.9 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:58.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2586 Male, age 75, left hemisphere 36.9
2019 Male, age 18, unknown 31.2
2666 Male, age 74, left hemisphere 31.0
1827 Male, age 72, unknown 29.5
2411 Female, age 72, unknown 28.0
1833 Male, age 53, unknown 26.8
1870 Female, age 42, unknown 25.6
2828 Female, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 24.5
1830 Male, age 51, unknown 22.2
Dorsal raphe nucleus
nTPM: 30.6
2047 Male, age 72, unknown 36.6
2298 Female, age 72, unknown 35.0
1828 Male, age 53, unknown 30.1
2016 Female, age 72, unknown 27.5
2750 Male, age 76, both hemispheres 23.6
Inferior colliculus
nTPM: 31.6
2097 Female, age 72, unknown 35.2
1848 Female, age 42, unknown 31.7
2849 Male, age 72, unknown 30.0
1890 Male, age 53, unknown 29.6
Median raphe nucleus
nTPM: 29.7
2220 Male, age 76, midline 29.7
Periaquaductal grey, anterior
nTPM: 30.8
1795 Male, age 51, unknown 32.6
1947 Male, age 18, unknown 31.5
2502 Female, age 75, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 29.8
1840 Male, age 53, unknown 36.1
2850 Male, age 76, both hemispheres 28.2
2464 Female, age 72, unknown 27.8
1831 Male, age 72, unknown 26.9
Periaquaductal grey, lateral
nTPM: 26.4
2272 Male, age 74, both hemispheres 27.0
2140 Male, age 76, both hemispheres 26.4
2053 Male, age 18, unknown 25.6
Pretectal area
nTPM: 30.2
2007 Male, age 72, unknown 37.9
2224 Female, age 72, unknown 35.4
1944 Female, age 72, unknown 34.5
1817 Female, age 42, unknown 32.7
1816 Male, age 51, unknown 32.2
2407 Male, age 75, both hemispheres 29.9
2825 Male, age 18, unknown 28.8
2667 Female, age 75, unknown 28.5
1815 Male, age 53, unknown 25.8
2273 Male, age 74, both hemispheres 24.5
2316 Male, age 76, right hemisphere 22.0
Red nucleus
nTPM: 22.8
1821 Female, age 72, unknown 25.8
2785 Male, age 18, unknown 25.4
2725 Female, age 75, unknown 25.3
2769 Male, age 72, unknown 24.7
2584 Male, age 75, left hemisphere 24.3
2227 Male, age 72, unknown 23.0
1954 Female, age 42, unknown 22.4
2823 Male, age 76, right hemisphere 21.8
2588 Male, age 74, left hemisphere 21.5
2503 Female, age 72, unknown 20.5
1904 Male, age 53, unknown 19.9
1865 Male, age 51, unknown 19.7
Substantia nigra
nTPM: 30.8
1916 Female, age 42, unknown 37.8
2665 Male, age 74, both hemispheres 36.6
1889 Female, age 72, unknown 35.4
1851 Male, age 51, unknown 33.4
1941 Male, age 53, unknown 32.5
2699 Male, age 18, unknown 27.4
2241 Male, age 72, unknown 26.7
2409 Female, age 72, unknown 26.6
2590 Female, age 75, unknown 25.8
2583 Male, age 75, right hemisphere 25.6
Superior colliculus
nTPM: 27.6
2664 Male, age 75, both hemispheres 36.2
2668 Female, age 75, unknown 32.7
1796 Male, age 53, unknown 31.1
2087 Female, age 72, unknown 29.4
1895 Male, age 76, right hemisphere 29.2
1839 Male, age 51, unknown 28.7
2587 Male, age 74, left hemisphere 25.9
2261 Male, age 18, unknown 24.9
1995 Male, age 72, unknown 19.9
1913 Female, age 42, unknown 17.7
Ventral tegmental area
nTPM: 29.7
1915 Female, age 42, unknown 32.8
2410 Female, age 72, unknown 32.1
1942 Male, age 51, unknown 31.8
2218 Male, age 76, both hemispheres 31.0
2021 Male, age 53, unknown 28.7
2223 Female, age 72, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 183

Max nTPM: 93.6
Min nTPM: 8.7
Std nTPM: 11.9
Median nTPM: 30.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 93.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 85.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 57.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 56.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 54.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 52.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 48.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 12.8
Sample A Female 27.7
Sample B Female 12.8
Sample C Male 24.5
Sample D Male 23.8
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 86.7
Min nTPM: 15.5
Sample A Female 86.7
Sample B Female 16.6
Sample C Male 15.5
Sample D Male 18.1
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 20.1
Min nTPM: 13.3
Sample B Female 13.3
Sample C Male 20.1
Sample D Male 16.1
Superior colliculi
nTPM: 47.6
Samples: 4

Max nTPM: 123.3
Min nTPM: 19.6
Sample A Female 22.8
Sample B Female 123.3
Sample C Male 19.6
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.5
Samples: 4

Max nTPM: 62.6
Min nTPM: 51.2
Sample A Male 62.6
Sample B Male 61.7
Sample C Female 51.2
Sample D Female 58.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978723 Antisense, RP_040923_01_F11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo