MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.7 nTPM
HPA Brain:103.5 nTPM
GTEx:19.7 nTPM
FANTOM5:206.9 Scaled Tags Per Million
Pig:66.1 nTPM
Mouse:80.4 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 103.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.0
2219 Male, age 76, both hemispheres 81.4
1870 Female, age 42, unknown 80.0
1833 Male, age 53, unknown 75.6
2411 Female, age 72, unknown 73.6
1830 Male, age 51, unknown 67.8
1827 Male, age 72, unknown 62.0
2666 Male, age 74, left hemisphere 60.7
2019 Male, age 18, unknown 59.0
2828 Female, age 72, unknown 56.5
2586 Male, age 75, left hemisphere 53.7
Dorsal raphe nucleus
nTPM: 73.2
2750 Male, age 76, both hemispheres 89.6
2047 Male, age 72, unknown 76.6
2298 Female, age 72, unknown 75.9
1828 Male, age 53, unknown 63.1
2016 Female, age 72, unknown 60.5
Inferior colliculus
nTPM: 62.9
2849 Male, age 72, unknown 64.1
1848 Female, age 42, unknown 64.0
2097 Female, age 72, unknown 63.9
1890 Male, age 53, unknown 59.8
Median raphe nucleus
nTPM: 103.5
2220 Male, age 76, midline 103.5
Periaquaductal grey, anterior
nTPM: 76.4
1947 Male, age 18, unknown 95.7
2502 Female, age 75, unknown 74.2
1795 Male, age 51, unknown 59.2
Periaquaductal grey, dorsal
nTPM: 61.0
2850 Male, age 76, both hemispheres 70.7
1840 Male, age 53, unknown 60.4
2464 Female, age 72, unknown 59.6
1831 Male, age 72, unknown 53.4
Periaquaductal grey, lateral
nTPM: 60.0
2140 Male, age 76, both hemispheres 61.8
2053 Male, age 18, unknown 61.4
2272 Male, age 74, both hemispheres 56.9
Pretectal area
nTPM: 64.4
2667 Female, age 75, unknown 70.7
1815 Male, age 53, unknown 69.8
1817 Female, age 42, unknown 67.2
1816 Male, age 51, unknown 66.9
2273 Male, age 74, both hemispheres 66.9
1944 Female, age 72, unknown 66.5
2825 Male, age 18, unknown 66.0
2224 Female, age 72, unknown 65.2
2007 Male, age 72, unknown 62.2
2316 Male, age 76, right hemisphere 54.6
2407 Male, age 75, both hemispheres 52.5
Red nucleus
nTPM: 67.3
1821 Female, age 72, unknown 86.5
1865 Male, age 51, unknown 78.1
1904 Male, age 53, unknown 75.5
1954 Female, age 42, unknown 73.9
2725 Female, age 75, unknown 68.7
2227 Male, age 72, unknown 65.0
2503 Female, age 72, unknown 64.6
2823 Male, age 76, right hemisphere 64.5
2769 Male, age 72, unknown 62.9
2588 Male, age 74, left hemisphere 58.2
2785 Male, age 18, unknown 56.7
2584 Male, age 75, left hemisphere 53.0
Substantia nigra
nTPM: 78.9
2241 Male, age 72, unknown 107.5
1916 Female, age 42, unknown 100.7
1851 Male, age 51, unknown 87.9
2409 Female, age 72, unknown 84.1
2699 Male, age 18, unknown 80.6
1941 Male, age 53, unknown 79.2
1889 Female, age 72, unknown 75.6
2583 Male, age 75, right hemisphere 59.1
2665 Male, age 74, both hemispheres 58.4
2590 Female, age 75, unknown 55.3
Superior colliculus
nTPM: 63.3
2668 Female, age 75, unknown 77.8
1913 Female, age 42, unknown 72.2
1895 Male, age 76, right hemisphere 68.2
2587 Male, age 74, left hemisphere 68.2
1839 Male, age 51, unknown 60.7
1796 Male, age 53, unknown 60.4
2261 Male, age 18, unknown 59.0
1995 Male, age 72, unknown 57.0
2087 Female, age 72, unknown 56.7
2664 Male, age 75, both hemispheres 52.7
Ventral tegmental area
nTPM: 75.3
2218 Male, age 76, both hemispheres 80.8
2410 Female, age 72, unknown 80.6
2223 Female, age 72, unknown 78.3
1915 Female, age 42, unknown 77.1
1942 Male, age 51, unknown 69.1
2021 Male, age 53, unknown 65.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.7
Samples: 183

Max nTPM: 37.8
Min nTPM: 6.8
Std nTPM: 4.0
Median nTPM: 19.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 37.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 34.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 31.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 28.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 28.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 27.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 26.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 26.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 26.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 206.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 206.9
FF:10158-103A5 76 years, female 206.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 72.4
Min nTPM: 47.1
Sample A Female 72.4
Sample B Female 47.1
Sample C Male 66.4
Sample D Male 59.0
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 73.5
Min nTPM: 55.1
Sample A Female 73.5
Sample B Female 55.1
Sample C Male 72.3
Sample D Male 63.5
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 59.1
Min nTPM: 48.9
Sample B Female 56.8
Sample C Male 59.1
Sample D Male 48.9
Superior colliculi
nTPM: 61.1
Samples: 4

Max nTPM: 65.2
Min nTPM: 50.7
Sample A Female 65.2
Sample B Female 50.7
Sample C Male 64.9
Sample D Male 63.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 85.5
Min nTPM: 71.8
Sample A Male 71.8
Sample B Male 83.8
Sample C Female 85.5
Sample D Female 80.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
70305610 Antisense, RP_050609_04_F06, Mouse strain C57BL/6J (56 days, male) 9.7

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